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Academic Journal

peaksat: an R package for ChIP-seq peak saturation analysis.

  • Authors : Boyd JR; Department of Biomedical and Health Sciences, University of Vermont, 106 Carrigan Drive, 302 Rowell, VT, 04505, Burlington, USA.; Gao C

Subjects: Chromatin Immunoprecipitation Sequencing*/Chromatin Immunoprecipitation Sequencing*/Chromatin Immunoprecipitation Sequencing*/methods ; High-Throughput Nucleotide Sequencing*; Sequence Analysis, DNA/Sequence Analysis, DNA/Sequence Analysis, DNA/methods

  • Source: BMC genomics [BMC Genomics] 2023 Jan 25; Vol. 24 (1), pp. 43. Date of Electronic Publication: 2023 Jan 25.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

XCVATR: detection and characterization of variant impact on the Embeddings of single -cell and bulk RNA-sequencing samples.

  • Authors : Harmanci A; University of Texas Health Science Center, School of Biomedical Informatics, Center for Secure Artificial intelligence For hEalthcare (SAFE), Center for Precision Health, Houston, USA. .; Harmanci AS

Subjects: Gene Expression Profiling*/Gene Expression Profiling*/Gene Expression Profiling*/methods ; High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/methods; Transcriptome

  • Source: BMC genomics [BMC Genomics] 2022 Dec 20; Vol. 23 (1), pp. 841. Date of Electronic Publication: 2022 Dec 20.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Using single-worm RNA sequencing to study C. elegans responses to pathogen infection.

  • Authors : Wang AJ; Genomics Core, Washington State University, Spokane, WA, USA.; Wibisono P

Subjects: Caenorhabditis elegans*/Caenorhabditis elegans*/Caenorhabditis elegans*/genetics ; High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/methods; Animals

  • Source: BMC genomics [BMC Genomics] 2022 Sep 14; Vol. 23 (1), pp. 653. Date of Electronic Publication: 2022 Sep 14.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Performance comparison of Agilent new SureSelect All Exon v8 probes with v7 probes for exome sequencing.

  • Authors : Belova V; Center for Precision Genome Editing and Genetic Technologies for Biomedicine, Pirogov Russian National Research Medical University, Ostrovityanova str. 1, Moscow, 117997, Russian Federation. .; Shmitko A

Subjects: Exome* ; High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/methods; Exons

  • Source: BMC genomics [BMC Genomics] 2022 Aug 12; Vol. 23 (1), pp. 582. Date of Electronic Publication: 2022 Aug 12.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Accuracy benchmark of the GeneMind GenoLab M sequencing platform for WGS and WES analysis.

  • Authors : Li C; GeneMind Biosciences Company Limited, Shenzhen, China.; Fan X

Subjects: Benchmarking* ; High-Throughput Nucleotide Sequencing*; INDEL Mutation

  • Source: BMC genomics [BMC Genomics] 2022 Jul 22; Vol. 23 (1), pp. 533. Date of Electronic Publication: 2022 Jul 22.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Evaluation of nine statistics to identify QTLs in bulk segregant analysis using next generation sequencing approaches.

Subjects: High-Throughput Nucleotide Sequencing* ; Quantitative Trait Loci*; Benchmarking

  • Source: BMC genomics [BMC Genomics] 2022 Jul 06; Vol. 23 (1), pp. 490. Date of Electronic Publication: 2022 Jul 06.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Manipulating base quality scores enables variant calling from bisulfite sequencing alignments using conventional bayesian approaches.

  • Authors : Nunn A; ecSeq Bioinformatics GmbH, Sternwartenstraße 29, Leipzig, 04103, Germany.; Department of Computer Science, University of Leipzig, Härtelstraße 16-18, Leipzig, 04107, Germany.

Subjects: High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/methods; Bayes Theorem ; Humans

  • Source: BMC genomics [BMC Genomics] 2022 Jun 28; Vol. 23 (1), pp. 477. Date of Electronic Publication: 2022 Jun 28.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

B-assembler: a circular bacterial genome assembler.

  • Authors : Huang F; Informatics Institute, Heersink School of Medicine, the University of Alabama at Birmingham, AL, 35294, Birmingham, USA.; Department of Genetics, Heersink School of Medicine, the University of Alabama at Birmingham, AL, 35294, Birmingham, USA.

Subjects: Genome, Bacterial* ; High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/methods; Bacteria/Bacteria/Bacteria/genetics

  • Source: BMC genomics [BMC Genomics] 2022 May 11; Vol. 23 (Suppl 4), pp. 361. Date of Electronic Publication: 2022 May 11.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Comprehensive evaluation of structural variant genotyping methods based on long-read sequencing data.

  • Authors : Duan X; State Key Laboratory of Genetic Engineering, Human Phenome Institute, Zhangjiang Fudan International Innovation Center, Fudan University, Shanghai, 200438, China.; MOE Key Laboratory of Contemporary Anthropology, Department of Anthropology and Human Genetics, School of Life Sciences, Fudan University, Shanghai, 200433, China.

Subjects: Genomics*/Genomics*/Genomics*/methods ; High-Throughput Nucleotide Sequencing*; Genomic Structural Variation

  • Source: BMC genomics [BMC Genomics] 2022 Apr 23; Vol. 23 (1), pp. 324. Date of Electronic Publication: 2022 Apr 23.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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