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Academic Journal

A comprehensive evaluation of long read error correction methods.

  • Authors : Zhang H; School of Computational Science and Engineering, Georgia Institute of Technology, Atlanta, 30332, GA, USA.; Jain C

Subjects: Algorithms* ; High-Throughput Nucleotide Sequencing*; Genomics

  • Source: BMC genomics [BMC Genomics] 2020 Dec 21; Vol. 21 (Suppl 6), pp. 889. Date of Electronic Publication: 2020 Dec 21.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

ComHapDet: a spatial community detection algorithm for haplotype assembly.

  • Authors : Sankararaman A; Department of Electrical and Computer Engineering, The University of Texas at Austin, Austin, TX, USA. .; Vikalo H

Subjects: Algorithms* ; High-Throughput Nucleotide Sequencing*; Diploidy

  • Source: BMC genomics [BMC Genomics] 2020 Sep 09; Vol. 21 (Suppl 9), pp. 586. Date of Electronic Publication: 2020 Sep 09.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Comparison of multiple algorithms to reliably detect structural variants in pears.

  • Authors : Liu Y; Center of Pear Engineering Technology Research, State Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Nanjing, 210095, Jiangsu, China.; Zhang M

Subjects: Algorithms* ; Genetic Variation* ; Software*

  • Source: BMC genomics [BMC Genomics] 2020 Jan 20; Vol. 21 (1), pp. 61. Date of Electronic Publication: 2020 Jan 20.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Clonal reconstruction from time course genomic sequencing data.

  • Authors : Ismail WM; School of Informatics, Computing and Engineering, Indiana University, Bloomington, IN, USA. .; Tang H

Subjects: Algorithms*; Bacteria/Bacteria/Bacteria/*genetics ; Clonal Evolution/Clonal Evolution/Clonal Evolution/*genetics

  • Source: BMC genomics [BMC Genomics] 2019 Dec 30; Vol. 20 (Suppl 12), pp. 1002. Date of Electronic Publication: 2019 Dec 30.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

A hybrid and scalable error correction algorithm for indel and substitution errors of long reads.

  • Authors : Das AK; Department of Computer Science and Software Engineering, University of Wisconsin at Platteville, Platteville, WI, USA. .; Goswami S

Subjects: Algorithms*; Computational Biology/Computational Biology/Computational Biology/*methods ; High-Throughput Nucleotide Sequencing/High-Throughput Nucleotide Sequencing/High-Throughput Nucleotide Sequencing/*methods

  • Source: BMC genomics [BMC Genomics] 2019 Dec 20; Vol. 20 (Suppl 11), pp. 948. Date of Electronic Publication: 2019 Dec 20.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

LRScaf: improving draft genomes using long noisy reads.

  • Authors : Qin M; Guangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, No. 7, Pengfei Road, Dapeng District, Shenzhen, 518120, Guangdong, China.; Wu S

Subjects: Algorithms*; Computational Biology/Computational Biology/Computational Biology/*methods ; Genome/Genome/Genome/*genetics

  • Source: BMC genomics [BMC Genomics] 2019 Dec 09; Vol. 20 (1), pp. 955. Date of Electronic Publication: 2019 Dec 09.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Identifying similar transcripts in a related organism from de Bruijn graphs of RNA-Seq data, with applications to the study of salt and waterlogging tolerance in Melilotus.

  • Authors : Fu S; Department of Biochemistry & Biophysics, Texas A&M University, College Station, 77843, TX, USA.; Chang PL

Subjects: Algorithms* ; Computer Graphics* ; Salt Tolerance*

  • Source: BMC genomics [BMC Genomics] 2019 Jun 06; Vol. 20 (Suppl 5), pp. 425. Date of Electronic Publication: 2019 Jun 06.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

APBioNet's annual International Conference on Bioinformatics (InCoB) returns to India in 2018.

  • Authors : Ahmad S; School of Computational and Integrative Sciences, Jawaharlal Nehru University, New Delhi, 110 067, India.; Gromiha MM

Subjects: Algorithms* ; Genome, Human* ; Software*

  • Source: BMC genomics [BMC Genomics] 2019 Apr 18; Vol. 19 (Suppl 9), pp. 266. Date of Electronic Publication: 2019 Apr 18.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

GPU accelerated sequence alignment with traceback for GATK HaplotypeCaller.

  • Authors : Ren S; Delft University of Technology, Mekelweg 4, Delft, 2628 CD, The Netherlands.; Ahmed N

Subjects: Algorithms* ; Computer Graphics* ; Genetic Variation*

  • Source: BMC genomics [BMC Genomics] 2019 Apr 04; Vol. 20 (Suppl 2), pp. 184. Date of Electronic Publication: 2019 Apr 04.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Signal enrichment with strain-level resolution in metagenomes using topological data analysis.

  • Authors : Guzmán-Sáenz A; Computational Biology Center, IBM T. J. Watson Research Center, Yorktown Heights, NY, USA.; Haiminen N

Subjects: Algorithms* ; Data Analysis* ; Metagenome*

  • Source: BMC genomics [BMC Genomics] 2019 Apr 04; Vol. 20 (Suppl 2), pp. 194. Date of Electronic Publication: 2019 Apr 04.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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