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Academic Journal

Reliability of genomic variants across different next-generation sequencing platforms and bioinformatic processing pipelines.

  • Authors : Weißbach S; Institute of Human Genetics, University Medical Center of the Johannes Gutenberg-University Mainz, Mainz, Germany.; Institute of Developmental Biology and Neurobiology, Johannes Gutenberg-University Mainz, Mainz, Germany.

Subjects: Computational Biology* ; High-Throughput Nucleotide Sequencing*; Cross-Sectional Studies

  • Source: BMC genomics [BMC Genomics] 2021 Jan 19; Vol. 22 (1), pp. 62. Date of Electronic Publication: 2021 Jan 19.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Enhancement of de novo sequencing, assembly and annotation of the Mongolian gerbil genome with transcriptome sequencing and assembly from several different tissues.

  • Authors : Cheng S; BGI-Shenzhen, Beishan Industrial Zone, Yantian District, Shenzhen, 518083, China.; State Key Laboratory of Agricultural Genomics, BGI-Shenzhen, Shenzhen, 51803, China.

Subjects: Computational Biology*/Computational Biology*/Computational Biology*/methods ; Genome* ; Genomics*/Genomics*/Genomics*/methods

  • Source: BMC genomics [BMC Genomics] 2019 Nov 27; Vol. 20 (1), pp. 903. Date of Electronic Publication: 2019 Nov 27.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Genomic nucleotide-based distance analysis for delimiting old world monkey derived herpes simplex virus species.

  • Authors : Kolb AW; Department of Ophthalmology and Visual Sciences, School of Medicine and Public Health, University of Wisconsin-Madison, 550 Bardeen Laboratories, 1300 University Ave, Madison, WI, 53706, USA. .; Brandt CR

Subjects: Cercopithecidae/Cercopithecidae/Cercopithecidae/*virology ; Computational Biology/Computational Biology/Computational Biology/*methods ; Sequence Analysis, DNA/Sequence Analysis, DNA/Sequence Analysis, DNA/*methods

  • Source: BMC genomics [BMC Genomics] 2020 Jun 26; Vol. 21 (1), pp. 436. Date of Electronic Publication: 2020 Jun 26.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

The effect of variant interference on de novo assembly for viral deep sequencing.

  • Authors : Castro CJ; Division of Viral Diseases, National Center for Immunization and Respiratory Diseases, Centers for Disease Control and Prevention, Atlanta, GA, 30329, USA.; Oak Ridge Institute for Science and Education, Oak Ridge, TN, USA.

Subjects: Mutation*; Computational Biology/Computational Biology/Computational Biology/*methods ; Viruses/Viruses/Viruses/*genetics

  • Source: BMC genomics [BMC Genomics] 2020 Jun 22; Vol. 21 (1), pp. 421. Date of Electronic Publication: 2020 Jun 22.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

The nuclear and mitochondrial genomes of Frieseomelitta varia - a highly eusocial stingless bee (Meliponini) with a permanently sterile worker caste.

  • Authors : de Paula Freitas FC; Departamento de Genética, Faculdade de Medicina de Ribeirão Preto, Universidade de São Paulo, Ribeirão Preto, SP, Brazil.; Departamento de Biologia Celular e do Desenvolvimento, Instituto de Ciências Biomédicas, Universidade Federal de Alfenas, Alfenas, MG, Brazil.

Subjects: Bees/Bees/Bees/*physiology ; Cell Nucleus/Cell Nucleus/Cell Nucleus/*genetics ; Computational Biology/Computational Biology/Computational Biology/*methods

  • Source: BMC genomics [BMC Genomics] 2020 Jun 03; Vol. 21 (1), pp. 386. Date of Electronic Publication: 2020 Jun 03.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Systematic comparison of small RNA library preparation protocols for next-generation sequencing.

  • Authors : Dard-Dascot C; Institute for Integrative Biology of the Cell, UMR9198, CNRS CEA Univ Paris-Sud, Université Paris-Saclay, 9198, Gif sur Yvette Cedex, France.; Naquin D

Subjects: Computational Biology*/Computational Biology*/Computational Biology*/methods ; Gene Library* ; High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/methods

  • Source: BMC genomics [BMC Genomics] 2018 Feb 05; Vol. 19 (1), pp. 118. Date of Electronic Publication: 2018 Feb 05.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Unique, dual-indexed sequencing adapters with UMIs effectively eliminate index cross-talk and significantly improve sensitivity of massively parallel sequencing.

  • Authors : MacConaill LE; Center for Cancer Genome Discovery, DFCI, 450 Brookline Avenue, Dana840b, Boston, MA, 02215, USA.; Department of Pathology, Brigham and Women's Hospital, Boston, MA, USA.

Subjects: High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/methods ; High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/standards ; Sequence Analysis, DNA*/Sequence Analysis, DNA*/Sequence Analysis, DNA*/methods

  • Source: BMC genomics [BMC Genomics] 2018 Jan 08; Vol. 19 (1), pp. 30. Date of Electronic Publication: 2018 Jan 08.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Assessing graph-based read mappers against a baseline approach highlights strengths and weaknesses of current methods.

  • Authors : Grytten I; Department of informatics, University of Oslo, Gaustadalleen 23 B, Oslo, 0371, Norway. .; Rand KD

Subjects: Computational Biology/Computational Biology/Computational Biology/*methods; Genome, Human ; High-Throughput Nucleotide Sequencing/High-Throughput Nucleotide Sequencing/High-Throughput Nucleotide Sequencing/methods

  • Source: BMC genomics [BMC Genomics] 2020 Apr 06; Vol. 21 (1), pp. 282. Date of Electronic Publication: 2020 Apr 06.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Tracy: basecalling, alignment, assembly and deconvolution of sanger chromatogram trace files.

  • Authors : Rausch T; European Molecular Biology Laboratory (EMBL), Genomics Core Facility, Heidelberg, 69117, Germany. .; European Molecular Biology Laboratory (EMBL), Genome Biology Unit, Heidelberg, 69117, Germany. .

Subjects: Computational Biology/Computational Biology/Computational Biology/*methods ; Sequence Analysis, DNA/Sequence Analysis, DNA/Sequence Analysis, DNA/*methods; High-Throughput Nucleotide Sequencing/High-Throughput Nucleotide Sequencing/High-Throughput Nucleotide Sequencing/methods

  • Source: BMC genomics [BMC Genomics] 2020 Mar 14; Vol. 21 (1), pp. 230. Date of Electronic Publication: 2020 Mar 14.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

InvBFM: finding genomic inversions from high-throughput sequence data based on feature mining.

  • Authors : Wu Z; College of Information Science and Technology, Beijing University of Chemical Technology, Beijing, People's Republic of China.; Wu Y

Subjects: Sequence Inversion*; Computational Biology/Computational Biology/Computational Biology/*methods ; Sequence Analysis, DNA/Sequence Analysis, DNA/Sequence Analysis, DNA/*methods

  • Source: BMC genomics [BMC Genomics] 2020 Mar 05; Vol. 21 (Suppl 1), pp. 173. Date of Electronic Publication: 2020 Mar 05.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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