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Academic Journal

Characterizing the properties of bisulfite sequencing data: maximizing power and sensitivity to identify between-group differences in DNA methylation.

  • Authors : Seiler Vellame D; College of Medicine and Health, University of Exeter, Royal Devon and Exeter Hospital, Exeter, EX2 5DW, UK. .; Castanho I

Subjects: DNA Methylation* ; Sulfites*; Epigenomics

  • Source: BMC genomics [BMC Genomics] 2021 Jun 15; Vol. 22 (1), pp. 446. Date of Electronic Publication: 2021 Jun 15.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

MethylStar: A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing data.

  • Authors : Shahryary Y; Technical University of Munich, Institute for Advanced Study (IAS), Lichtenbergstr. 2a, Garching, 85748, Germany.; Technical University of Munich, Department of Plant Sciences, Liesel-Beckmann-Str. 2, Freising, 85354, Germany.

Subjects: DNA Methylation* ; Software* ; Sulfites*

  • Source: BMC genomics [BMC Genomics] 2020 Jul 13; Vol. 21 (1), pp. 479. Date of Electronic Publication: 2020 Jul 13.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

RELIC: a novel dye-bias correction method for Illumina Methylation BeadChip.

  • Authors : Xu Z; Epidemiology Branch, National Institute of Environmental Health Sciences, NIH, Research Triangle Park, NC, USA.; Langie SA

Subjects: DNA Methylation* ; High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/methods ; High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/standards

  • Source: BMC genomics [BMC Genomics] 2017 Jan 03; Vol. 18 (1), pp. 4. Date of Electronic Publication: 2017 Jan 03.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Software updates in the Illumina HiSeq platform affect whole-genome bisulfite sequencing.

  • Authors : Toh H; Division of Epigenomics and Development, Medical Institute of Bioregulation, Kyushu University, Fukuoka, Japan.; Shirane K

Subjects: DNA Methylation* ; Epigenesis, Genetic* ; Epigenomics*/Epigenomics*/Epigenomics*/methods

  • Source: BMC genomics [BMC Genomics] 2017 Jan 05; Vol. 18 (1), pp. 31. Date of Electronic Publication: 2017 Jan 05.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

A multi-scale analysis of bull sperm methylome revealed both species peculiarities and conserved tissue-specific features.

  • Authors : Perrier JP; UMR BDR, INRA, ENVA, Université Paris Saclay, 78350, Jouy en Josas, France.; Present Address: Laboratory of Animal Reproduction, Department of Biological Sciences, Faculty of Science and Engineering, University of Limerick, Limerick, Ireland.

Subjects: DNA Methylation* ; Genomics*; Spermatozoa/Spermatozoa/Spermatozoa/*metabolism

  • Source: BMC genomics [BMC Genomics] 2018 May 29; Vol. 19 (1), pp. 404. Date of Electronic Publication: 2018 May 29.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

BoostMe accurately predicts DNA methylation values in whole-genome bisulfite sequencing of multiple human tissues.

Subjects: Whole Genome Sequencing*; Computational Biology/Computational Biology/Computational Biology/*methods ; DNA Methylation/DNA Methylation/DNA Methylation/*drug effects

  • Source: BMC genomics [BMC Genomics] 2018 May 23; Vol. 19 (1), pp. 390. Date of Electronic Publication: 2018 May 23.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Successful application of human-based methyl capture sequencing for methylome analysis in non-human primate models.

  • Authors : Lee JR; Primate Resource Center, Korea Research Institute of Bioscience and Biotechnology, Jeongeup, 56216, Republic of Korea.; Ryu DS

Subjects: Chlorocebus aethiops* ; DNA Methylation* ; Macaca fascicularis*

  • Source: BMC genomics [BMC Genomics] 2018 Apr 18; Vol. 19 (1), pp. 267. Date of Electronic Publication: 2018 Apr 18.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Single-base resolution methylomes of upland cotton (Gossypium hirsutum L.) reveal epigenome modifications in response to drought stress.

  • Authors : Lu X; State Key Laboratory of Cotton Biology/Institute of Cotton Research of Chinese Academy of Agricultural Sciences/Key Laboratory for Cotton Genetic Improvement, Anyang, 455000, Henan, China.; College of Agronomy, Xinjiang Agricultural University, Urumqi, 830052, China.

Subjects: DNA Methylation*; Gossypium/Gossypium/Gossypium/*genetics ; High-Throughput Nucleotide Sequencing/High-Throughput Nucleotide Sequencing/High-Throughput Nucleotide Sequencing/*methods

  • Source: BMC genomics [BMC Genomics] 2017 Apr 13; Vol. 18 (1), pp. 297. Date of Electronic Publication: 2017 Apr 13.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Male fertility status is associated with DNA methylation signatures in sperm and transcriptomic profiles of bovine preimplantation embryos.

  • Authors : Kropp J; Department of Animal Sciences, University of Wisconsin-Madison, Madison, WI, 53706, USA.; Carrillo JA

Subjects: DNA Methylation* ; Transcriptome*; Blastocyst/Blastocyst/Blastocyst/*metabolism

  • Source: BMC genomics [BMC Genomics] 2017 Apr 05; Vol. 18 (1), pp. 280. Date of Electronic Publication: 2017 Apr 05.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Impact of neonatal iron deficiency on hippocampal DNA methylation and gene transcription in a porcine biomedical model of cognitive development.

  • Authors : Schachtschneider KM; Department of Animal Sciences, University of Illinois, 1201 W Gregory Drive, Urbana, IL, 61801, USA.; Animal Breeding and Genomics Centre, Wageningen University, P.O. Box 338, Wageningen, 6700AH, The Netherlands.

Subjects: DNA Methylation* ; Gene Expression Regulation* ; Iron Deficiencies*

  • Source: BMC genomics [BMC Genomics] 2016 Nov 03; Vol. 17 (1), pp. 856. Date of Electronic Publication: 2016 Nov 03.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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