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Academic Journal

A comparison of mRNA sequencing (RNA-Seq) library preparation methods for transcriptome analysis.

  • Authors : Ura H; Center for Clinical Genomics, Kanazawa Medical University Hospital, 1-1 Daigaku, Uchinada, Kahoku, Ishikawa, 920-0923, Japan. .; Division of Genomic Medicine, Department of Advanced Medicine, Medical Research Institute, Kanazawa Medical University, 1-1 Daigaku, Uchinada, Kahoku, Ishikawa, 920-0923, Japan. .

Subjects: Gene Expression Profiling*/Gene Expression Profiling*/Gene Expression Profiling*/methods ; Transcriptome*; Alternative Splicing

  • Source: BMC genomics [BMC Genomics] 2022 Apr 13; Vol. 23 (1), pp. 303. Date of Electronic Publication: 2022 Apr 13.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Assembly-free rapid differential gene expression analysis in non-model organisms using DNA-protein alignment.

  • Authors : Shrestha AMS; Bioinformatics Lab, Advanced Research Institute for Informatics, Computing, and Networking (AdRIC), De La Salle University, Manila, Philippines. .; Department of Software Technology, College of Computer Studies, De La Salle University, Manila, Philippines. .

Subjects: Gene Expression Profiling* ; Transcriptome*; DNA

  • Source: BMC genomics [BMC Genomics] 2022 Feb 04; Vol. 23 (1), pp. 97. Date of Electronic Publication: 2022 Feb 04.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Choice of library size normalization and statistical methods for differential gene expression analysis in balanced two-group comparisons for RNA-seq studies.

  • Authors : Li X; Department of Anatomical Sciences and Neurobiology, University of Louisville, Louisville, KY, USA. .; Cooper NGF

Subjects: Gene Expression Profiling*/Gene Expression Profiling*/Gene Expression Profiling*/methods ; Gene Expression Profiling*/Gene Expression Profiling*/Gene Expression Profiling*/standards ; Gene Library*

  • Source: BMC genomics [BMC Genomics] 2020 Jan 28; Vol. 21 (1), pp. 75. Date of Electronic Publication: 2020 Jan 28.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Systematic comparison of high-throughput single-cell RNA-seq methods for immune cell profiling.

  • Authors : Yamawaki TM; Genome Analysis Unit, Amgen Research, 1120 Veterans Blvd, South San Francisco, CA, 94080, USA.; Lu DR

Subjects: Gene Expression Profiling* ; Single-Cell Analysis*; Animals

  • Source: BMC genomics [BMC Genomics] 2021 Jan 20; Vol. 22 (1), pp. 66. Date of Electronic Publication: 2021 Jan 20.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Illuminating the dark side of the human transcriptome with long read transcript sequencing.

  • Authors : Kuo RI; The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Midlothian, EH25 9RG, UK. .; Cheng Y

Subjects: Gene Expression Profiling* ; Transcriptome*; High-Throughput Nucleotide Sequencing

  • Source: BMC genomics [BMC Genomics] 2020 Oct 30; Vol. 21 (1), pp. 751. Date of Electronic Publication: 2020 Oct 30.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

PacBio single molecule long-read sequencing provides insight into the complexity and diversity of the Pinctada fucata martensii transcriptome.

  • Authors : Zhang H; CAS Key Laboratory of Tropical Marine Bio-resources and Ecology, Guangdong Provincial Key Laboratory of Applied Marine Biology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, 510301, China.; Xu H

Subjects: Transcriptome*; Gene Expression Profiling/Gene Expression Profiling/Gene Expression Profiling/*methods ; High-Throughput Nucleotide Sequencing/High-Throughput Nucleotide Sequencing/High-Throughput Nucleotide Sequencing/*methods

  • Source: BMC genomics [BMC Genomics] 2020 Jul 13; Vol. 21 (1), pp. 481. Date of Electronic Publication: 2020 Jul 13.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Chi-miR-30b-5p inhibits dermal papilla cells proliferation by targeting CaMKIIδ gene in cashmere goat.

  • Authors : Zhang Y; Key Laboratory of Animal Genetics, Breeding and Reproduction of Shaanxi Province, College of Animal Science and Technology, Northwest A&F University, Yangling, 712100, Shaanxi, China.; Present address: College of Animal Science & Technology, Northwest A&F University, No.3 Taicheng Road, Yangling, 712100, Shaanxi, China.

Subjects: Calcium-Calmodulin-Dependent Protein Kinase Type 2/Calcium-Calmodulin-Dependent Protein Kinase Type 2/Calcium-Calmodulin-Dependent Protein Kinase Type 2/*genetics ; Gene Expression Profiling/Gene Expression Profiling/Gene Expression Profiling/*veterinary ; Goats/Goats/Goats/*growth & development

  • Source: BMC genomics [BMC Genomics] 2020 Jun 26; Vol. 21 (1), pp. 430. Date of Electronic Publication: 2020 Jun 26.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Transcriptomic analysis reveals hub genes and subnetworks related to ROS metabolism in Hylocereus undatus through novel superoxide scavenger trypsin treatment during storage.

  • Authors : Li X; College of Food and Bioengineering, Henan University of Science and Technology, No. 263, Kaiyuan Avenue, Luolong District, Luoyang city, 471023, Henan, China. .; State Key Laboratory of Cotton Biology, Henan University, Kaifeng, 455000, China. .

Subjects: Cactaceae/Cactaceae/Cactaceae/*growth & development ; Gene Expression Profiling/Gene Expression Profiling/Gene Expression Profiling/*methods ; Gene Regulatory Networks/Gene Regulatory Networks/Gene Regulatory Networks/*drug effects

  • Source: BMC genomics [BMC Genomics] 2020 Jun 26; Vol. 21 (1), pp. 437. Date of Electronic Publication: 2020 Jun 26.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Genomic and transcriptomic survey of an endophytic fungus Calcarisporium arbuscula NRRL 3705 and potential overview of its secondary metabolites.

  • Authors : Cheng JT; Institute of Pharmaceutical Biotechnology, School of Medicine, Zhejiang University, Hangzhou, 310058, China.; Zhejiang Provincial Key Laboratory for Microbial Biochemistry and Metabolic Engineering, Hangzhou, 310058, China.

Subjects: Fungal Proteins/Fungal Proteins/Fungal Proteins/*genetics ; Gene Expression Profiling/Gene Expression Profiling/Gene Expression Profiling/*methods ; Hypocreales/Hypocreales/Hypocreales/*genetics Calcarisporium arbuscula

  • Source: BMC genomics [BMC Genomics] 2020 Jun 24; Vol. 21 (1), pp. 424. Date of Electronic Publication: 2020 Jun 24.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Understanding the early cold response mechanism in IR64 indica rice variety through comparative transcriptome analysis.

  • Authors : Dasgupta P; Division of Plant Biology, Bose Institute, P1/12 CIT Scheme VII M, Kolkata, 700054, India.; Das A

Subjects: Gene Regulatory Networks*; Gene Expression Profiling/Gene Expression Profiling/Gene Expression Profiling/*methods ; Oryza/Oryza/Oryza/*classification

  • Source: BMC genomics [BMC Genomics] 2020 Jun 24; Vol. 21 (1), pp. 425. Date of Electronic Publication: 2020 Jun 24.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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