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Academic Journal

TC-hunter: identification of the insertion site of a transgenic gene within the host genome.

Subjects: Genome* ; High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/methods; Animals

  • Source: BMC genomics [BMC Genomics] 2022 Feb 20; Vol. 23 (1), pp. 149. Date of Electronic Publication: 2022 Feb 20.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Optimization of enzymatic fragmentation is crucial to maximize genome coverage: a comparison of library preparation methods for Illumina sequencing.

  • Authors : Ribarska T; Department Medical Genetics, Oslo University Hospital and University of Oslo, Kirkeveien 166, 0450, Oslo, Norway.; Bjørnstad PM

Subjects: Genome* ; High-Throughput Nucleotide Sequencing*; Gene Library

  • Source: BMC genomics [BMC Genomics] 2022 Feb 01; Vol. 23 (1), pp. 92. Date of Electronic Publication: 2022 Feb 01.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Population differentiated copy number variation of Bos taurus, Bos indicus and their African hybrids.

  • Authors : Jang J; Interdisciplinary Program in Bioinformatics, Seoul National University, Seoul, Republic of Korea.; Terefe E

Subjects: DNA Copy Number Variations* ; Genome*; Animals

  • Source: BMC genomics [BMC Genomics] 2021 Jul 12; Vol. 22 (1), pp. 531. Date of Electronic Publication: 2021 Jul 12.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Enhancement of de novo sequencing, assembly and annotation of the Mongolian gerbil genome with transcriptome sequencing and assembly from several different tissues.

  • Authors : Cheng S; BGI-Shenzhen, Beishan Industrial Zone, Yantian District, Shenzhen, 518083, China.; State Key Laboratory of Agricultural Genomics, BGI-Shenzhen, Shenzhen, 51803, China.

Subjects: Computational Biology*/Computational Biology*/Computational Biology*/methods ; Genome* ; Genomics*/Genomics*/Genomics*/methods

  • Source: BMC genomics [BMC Genomics] 2019 Nov 27; Vol. 20 (1), pp. 903. Date of Electronic Publication: 2019 Nov 27.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Competitive mapping allows for the identification and exclusion of human DNA contamination in ancient faunal genomic datasets.

  • Authors : Feuerborn TR; Globe Institute, University of Copenhagen, Copenhagen, Denmark. .; Archaeological Research Laboratory, Department of Archaeology and Classical Studies, Stockholm University, Stockholm, Sweden. .

Subjects: DNA Contamination* ; Genome*; DNA, Ancient

  • Source: BMC genomics [BMC Genomics] 2020 Nov 30; Vol. 21 (1), pp. 844. Date of Electronic Publication: 2020 Nov 30.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

An improved de novo genome assembly of the common marmoset genome yields improved contiguity and increased mapping rates of sequence data.

  • Authors : Jayakumar V; Department of Biosciences and Informatics, Keio University, Yokohama, Kanagawa, 223-8522, Japan.; Ishii H

Subjects: Callithrix/Callithrix/Callithrix/*genetics ; Chromosome Mapping/Chromosome Mapping/Chromosome Mapping/*methods ; Genome/Genome/Genome/*genetics

  • Source: BMC genomics [BMC Genomics] 2020 Apr 02; Vol. 21 (Suppl 3), pp. 243. Date of Electronic Publication: 2020 Apr 02.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

LRScaf: improving draft genomes using long noisy reads.

  • Authors : Qin M; Guangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, No. 7, Pengfei Road, Dapeng District, Shenzhen, 518120, Guangdong, China.; Wu S

Subjects: Algorithms*; Computational Biology/Computational Biology/Computational Biology/*methods ; Genome/Genome/Genome/*genetics

  • Source: BMC genomics [BMC Genomics] 2019 Dec 09; Vol. 20 (1), pp. 955. Date of Electronic Publication: 2019 Dec 09.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Whole genome resequencing reveals diagnostic markers for investigating global migration and hybridization between minke whale species.

  • Authors : Malde K; Institute of Marine Research, PO box 1870, Nordnes, N-5817, Bergen, Norway.; Department of Informatics, University of Bergen, N-5020, Bergen, Norway.

Subjects: Animal Migration* ; Genetic Markers* ; Genome*

  • Source: BMC genomics [BMC Genomics] 2017 Jan 13; Vol. 18 (1), pp. 76. Date of Electronic Publication: 2017 Jan 13.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Software updates in the Illumina HiSeq platform affect whole-genome bisulfite sequencing.

  • Authors : Toh H; Division of Epigenomics and Development, Medical Institute of Bioregulation, Kyushu University, Fukuoka, Japan.; Shirane K

Subjects: DNA Methylation* ; Epigenesis, Genetic* ; Epigenomics*/Epigenomics*/Epigenomics*/methods

  • Source: BMC genomics [BMC Genomics] 2017 Jan 05; Vol. 18 (1), pp. 31. Date of Electronic Publication: 2017 Jan 05.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

From reference genomes to population genomics: comparing three reference-aligned reduced-representation sequencing pipelines in two wildlife species.

  • Authors : Wright B; Faculty of Science, The University of Sydney, School of Life and Environmental Sciences, Sydney, Australia.; Farquharson KA

Subjects: Genome* ; Polymorphism, Single Nucleotide*; Geese/Geese/Geese/*genetics

  • Source: BMC genomics [BMC Genomics] 2019 Jun 03; Vol. 20 (1), pp. 453. Date of Electronic Publication: 2019 Jun 03.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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