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Academic Journal

B-assembler: a circular bacterial genome assembler.

  • Authors : Huang F; Informatics Institute, Heersink School of Medicine, the University of Alabama at Birmingham, AL, 35294, Birmingham, USA.; Department of Genetics, Heersink School of Medicine, the University of Alabama at Birmingham, AL, 35294, Birmingham, USA.

Subjects: Genome, Bacterial* ; High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/methods; Bacteria/Bacteria/Bacteria/genetics

  • Source: BMC genomics [BMC Genomics] 2022 May 11; Vol. 23 (Suppl 4), pp. 361. Date of Electronic Publication: 2022 May 11.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Testing assembly strategies of Francisella tularensis genomes to infer an evolutionary conservation analysis of genomic structures.

  • Authors : Neubert K; Department of Mathematics and Computer Science, Algorithmic Bioinformatics, Freie Universität Berlin, Institute of Computer Science, Takustr. 9, 14195, Berlin, Germany.; German Federal Institute for Risk Assessment, Diedersdorfer Weg 1, 12277, Berlin, Germany.

Subjects: Francisella tularensis*/Francisella tularensis*/Francisella tularensis*/genetics ; Genome, Bacterial*; DNA Transposable Elements

  • Source: BMC genomics [BMC Genomics] 2021 Nov 14; Vol. 22 (1), pp. 822. Date of Electronic Publication: 2021 Nov 14.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

MicroPIPE: validating an end-to-end workflow for high-quality complete bacterial genome construction.

  • Authors : Murigneux V; QCIF Facility for Advanced Bioinformatics, Institute for Molecular Bioscience, The University of Queensland, Brisbane, Queensland, Australia.; Roberts LW

Subjects: Escherichia coli* ; Genome, Bacterial*; Computational Biology

  • Source: BMC genomics [BMC Genomics] 2021 Jun 25; Vol. 22 (1), pp. 474. Date of Electronic Publication: 2021 Jun 25.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Evaluation of strategies for the assembly of diverse bacterial genomes using MinION long-read sequencing.

  • Authors : Goldstein S; Department of Molecular and Cell Biology, University of Connecticut, Storrs, CT, USA.; Beka L

Subjects: Genomics* ; High-Throughput Nucleotide Sequencing*; Biosynthetic Pathways/Biosynthetic Pathways/Biosynthetic Pathways/*genetics

  • Source: BMC genomics [BMC Genomics] 2019 Jan 09; Vol. 20 (1), pp. 23. Date of Electronic Publication: 2019 Jan 09.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Completion of draft bacterial genomes by long-read sequencing of synthetic genomic pools.

  • Authors : Derakhshani H; Farncombe Family Digestive Health Research Institute, McMaster University, Hamilton, Ontario, Canada. .; Department of Medicine, McMaster University, Hamilton, Ontario, Canada. .

Subjects: Genome, Bacterial* ; Genomics*; High-Throughput Nucleotide Sequencing

  • Source: BMC genomics [BMC Genomics] 2020 Jul 29; Vol. 21 (1), pp. 519. Date of Electronic Publication: 2020 Jul 29.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Phylogenetic, comparative genomic and structural analyses of human Streptococcus agalactiae ST485 in China.

  • Authors : Wang R; Guangxi Key Laboratory for Aquatic Genetic Breeding and Healthy Aquaculture, Guangxi Academy of Fishery Sciences, Nanning, Guangxi, 530021, People's Republic of China.; Institute of Animal Science and Technology, Guangxi University, Nanning, 530005, Guangxi, China.

Subjects: Genome, Bacterial*; Sequence Analysis, DNA/Sequence Analysis, DNA/Sequence Analysis, DNA/*methods ; Streptococcal Infections/Streptococcal Infections/Streptococcal Infections/*microbiology

  • Source: BMC genomics [BMC Genomics] 2018 Sep 27; Vol. 19 (1), pp. 716. Date of Electronic Publication: 2018 Sep 27.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

High-throughput detection of RNA processing in bacteria.

  • Authors : Gill EE; Department of Molecular Biology and Biochemistry, Simon Fraser University, 8888 University Drive, Burnaby, BC, V5A 1S6, Canada.; Chan LS

Subjects: Genome, Bacterial* ; RNA Processing, Post-Transcriptional* ; Transcription Initiation Site*

  • Source: BMC genomics [BMC Genomics] 2018 Mar 27; Vol. 19 (1), pp. 223. Date of Electronic Publication: 2018 Mar 27.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Primordial origin and diversification of plasmids in Lyme disease agent bacteria.

  • Authors : Casjens SR; Division of Microbiology and Immunology, Pathology Department and Biology Department, University of Utah School of Medicine, Salt Lake City, UT, USA. .; Biology Department, University of Utah, Salt Lake City, UT, USA. .

Subjects: Genome, Bacterial*; Borrelia burgdorferi/Borrelia burgdorferi/Borrelia burgdorferi/*classification ; Borrelia burgdorferi/Borrelia burgdorferi/Borrelia burgdorferi/*genetics

  • Source: BMC genomics [BMC Genomics] 2018 Mar 27; Vol. 19 (1), pp. 218. Date of Electronic Publication: 2018 Mar 27.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Comparative genomic analysis reveals the evolution and environmental adaptation strategies of vibrios.

  • Authors : Lin H; College of Marine Life Sciences, Ocean University of China, 5 Yushan Road, Qingdao, 266003, People's Republic of China.; Yu M

Subjects: Evolution, Molecular*; Adaptation, Physiological/Adaptation, Physiological/Adaptation, Physiological/*genetics ; Genome, Bacterial/Genome, Bacterial/Genome, Bacterial/*genetics

  • Source: BMC genomics [BMC Genomics] 2018 Feb 13; Vol. 19 (1), pp. 135. Date of Electronic Publication: 2018 Feb 13.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Genome analysis of Mycoplasma synoviae strain MS-H, the most common M. synoviae strain with a worldwide distribution.

  • Authors : Zhu L; Asia-Pacific Centre for Animal Health, Melbourne Veterinary School, Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, Werribee, VIC, 3030, Australia. .; Shahid MA

Subjects: Genome, Bacterial*; Bacterial Proteins/Bacterial Proteins/Bacterial Proteins/*genetics ; Bacterial Vaccines/Bacterial Vaccines/Bacterial Vaccines/*genetics

  • Source: BMC genomics [BMC Genomics] 2018 Feb 02; Vol. 19 (1), pp. 117. Date of Electronic Publication: 2018 Feb 02.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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