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Academic Journal

Impact of human gene annotations on RNA-seq differential expression analysis.

  • Authors : Hamaguchi Y; Faculty of Science and Engineering, Waseda University, 55N-06-10, 3-4-1 Okubo Shinjuku-ku, Tokyo, 169-8555, Japan. .; Zeng C

Subjects: Genome, Human* ; High-Throughput Nucleotide Sequencing*; Humans

  • Source: BMC genomics [BMC Genomics] 2021 Oct 08; Vol. 22 (1), pp. 730. Date of Electronic Publication: 2021 Oct 08.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Sketch distance-based clustering of chromosomes for large genome database compression.

  • Authors : Tang T; Advanced Analytics Institute, Faculty of Engineering and IT, University of Technology Sydney, Broadway, Sydney, NSW 2007, Australia.; Liu Y

Subjects: Databases, Genetic*; Chromosomes, Human/Chromosomes, Human/Chromosomes, Human/*genetics ; Data Compression/Data Compression/Data Compression/*methods

  • Source: BMC genomics [BMC Genomics] 2019 Dec 30; Vol. 20 (Suppl 10), pp. 978. Date of Electronic Publication: 2019 Dec 30.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Analysis of five deep-sequenced trio-genomes of the Peninsular Malaysia Orang Asli and North Borneo populations.

  • Authors : Deng L; Key Laboratory of Computational Biology, CAS-MPG Partner Institute for Computational Biology, Shanghai Institute of Nutrition and Health, Shanghai Institutes for Biological Sciences, University of Chinese Academy of Sciences, Chinese Academy of Sciences, Shanghai, China.; Lou H

Subjects: Genetic Variation* ; Genome, Human*; Animals

  • Source: BMC genomics [BMC Genomics] 2019 Nov 12; Vol. 20 (1), pp. 842. Date of Electronic Publication: 2019 Nov 12.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Evaluating the quality of the 1000 genomes project data.

  • Authors : Belsare S; Institute for Human Genetics, University of California, San Francisco, CA, 94143, USA. .; Levy-Sakin M

Subjects: Genome, Human/Genome, Human/Genome, Human/*genetics ; Haplotypes/Haplotypes/Haplotypes/*genetics ; Racial Groups/Racial Groups/Racial Groups/*genetics

  • Source: BMC genomics [BMC Genomics] 2019 Aug 16; Vol. 20 (1), pp. 620. Date of Electronic Publication: 2019 Aug 16.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

GAPPadder: a sensitive approach for closing gaps on draft genomes with short sequence reads.

  • Authors : Chu C; Dept. of Computer Science and Engineering, University of Connecticut, 371 Fairfield Way, Storrs, CT, USA. .; Li X

Subjects: Genome, Human* ; Repetitive Sequences, Nucleic Acid*; Contig Mapping/Contig Mapping/Contig Mapping/*methods

  • Source: BMC genomics [BMC Genomics] 2019 Jun 06; Vol. 20 (Suppl 5), pp. 426. Date of Electronic Publication: 2019 Jun 06.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

scNPF: an integrative framework assisted by network propagation and network fusion for preprocessing of single-cell RNA-seq data.

  • Authors : Ye W; Department of Automation, Xiamen University, Xiamen, 361005, China.; Xiamen Research Institute of National Center of Healthcare Big Data, Xiamen, China.

Subjects: Gene Expression Regulation* ; Gene Regulatory Networks* ; Genome, Human*

  • Source: BMC genomics [BMC Genomics] 2019 May 08; Vol. 20 (1), pp. 347. Date of Electronic Publication: 2019 May 08.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

APBioNet's annual International Conference on Bioinformatics (InCoB) returns to India in 2018.

  • Authors : Ahmad S; School of Computational and Integrative Sciences, Jawaharlal Nehru University, New Delhi, 110 067, India.; Gromiha MM

Subjects: Algorithms* ; Genome, Human* ; Software*

  • Source: BMC genomics [BMC Genomics] 2019 Apr 18; Vol. 19 (Suppl 9), pp. 266. Date of Electronic Publication: 2019 Apr 18.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

GPU accelerated sequence alignment with traceback for GATK HaplotypeCaller.

  • Authors : Ren S; Delft University of Technology, Mekelweg 4, Delft, 2628 CD, The Netherlands.; Ahmed N

Subjects: Algorithms* ; Computer Graphics* ; Genetic Variation*

  • Source: BMC genomics [BMC Genomics] 2019 Apr 04; Vol. 20 (Suppl 2), pp. 184. Date of Electronic Publication: 2019 Apr 04.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

A distance-type measure approach to the analysis of copy number variation in DNA sequencing data.

  • Authors : Biswas B; Diagnostics Devices Branch 1, FDA/CDRH/OSB-DBS, White Oak Bldg #66, Room 2222, 10903 New Hampshire Avenue, Silver Spring, MD, 20993, USA.; Lai Y

Subjects: Algorithms* ; DNA Copy Number Variations* ; Genome, Human*

  • Source: BMC genomics [BMC Genomics] 2019 Apr 04; Vol. 20 (Suppl 2), pp. 195. Date of Electronic Publication: 2019 Apr 04.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Linear models enable powerful differential activity analysis in massively parallel reporter assays.

  • Authors : Myint L; Department of Mathematics, Statistics, and Computer Science, Macalester College, 1600 Grand Ave, Saint Paul, MN 55105, USA.; Avramopoulos DG

Subjects: Genome, Human*; High-Throughput Nucleotide Sequencing/High-Throughput Nucleotide Sequencing/High-Throughput Nucleotide Sequencing/*methods; Humans

  • Source: BMC genomics [BMC Genomics] 2019 Mar 12; Vol. 20 (1), pp. 209. Date of Electronic Publication: 2019 Mar 12.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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