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Academic Journal

Impact of short-read sequencing on the misassembly of a plant genome.

  • Authors : Wang P; Department of Plant Biology, Michigan State University, East Lansing, MI, 48824, USA.; DOE Great Lake Bioenergy Research Center, Michigan State University, East Lansing, MI, 48824, USA.

Subjects: Genome, Plant* ; High-Throughput Nucleotide Sequencing*; DNA Transposable Elements/DNA Transposable Elements/DNA Transposable Elements/genetics

  • Source: BMC genomics [BMC Genomics] 2021 Feb 02; Vol. 22 (1), pp. 99. Date of Electronic Publication: 2021 Feb 02.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Using multiple reference genomes to identify and resolve annotation inconsistencies.

  • Authors : Monnahan PJ; Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul, MN, 55108, USA.; Department of Ecology, Evolution, and Behavior, University of Minnesota, St. Paul, MN, 55108, USA.

Subjects: Genome, Plant*; Molecular Sequence Annotation/Molecular Sequence Annotation/Molecular Sequence Annotation/*methods ; Zea mays/Zea mays/Zea mays/*growth & development

  • Source: BMC genomics [BMC Genomics] 2020 Apr 08; Vol. 21 (1), pp. 281. Date of Electronic Publication: 2020 Apr 08.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Comprehensive analysis of the Gossypium hirsutum L. respiratory burst oxidase homolog (Ghrboh) gene family.

  • Authors : Wang W; State Key Laboratory of Crop Biology, College of Agronomy, Shandong Agricultural University, NO. 61 Daizong Street, Tai'an, Shandong, 271018, People's Republic of China.; Chen D

Subjects: Genome, Plant* ; Genomics*/Genomics*/Genomics*/methods ; Multigene Family*

  • Source: BMC genomics [BMC Genomics] 2020 Jan 29; Vol. 21 (1), pp. 91. Date of Electronic Publication: 2020 Jan 29.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

High throughput genotyping of structural variations in a complex plant genome using an original Affymetrix® axiom® array.

  • Authors : Mabire C; GQE - Le Moulon, INRA, Univ. Paris-Sud, CNRS, AgroParisTech, Université Paris-Saclay, 91190, Gif-sur-Yvette, France.; Duarte J

Subjects: Genome, Plant* ; INDEL Mutation* ; Oligonucleotide Array Sequence Analysis*

  • Source: BMC genomics [BMC Genomics] 2019 Nov 13; Vol. 20 (1), pp. 848. Date of Electronic Publication: 2019 Nov 13.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Genetic diversity of avocado (Persea americana Mill.) germplasm using pooled sequencing.

  • Authors : Rubinstein M; Department of Fruit Trees Sciences, Institute of Plant Sciences, Agricultural Research Organization, Volcani Center, Rishon Lezion, Israel.; Eshed R

Subjects: Genetics, Population* ; Genome, Plant* ; Polymorphism, Single Nucleotide*

  • Source: BMC genomics [BMC Genomics] 2019 May 15; Vol. 20 (1), pp. 379. Date of Electronic Publication: 2019 May 15.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Alignment-free genome comparison enables accurate geographic sourcing of white oak DNA.

  • Authors : Tang K; Quantitative and Computational Biology Program, University of Southern California, Los Angeles, CA, 90089, USA.; Ren J

Subjects: Genome, Plant* ; Geography*; DNA, Plant/DNA, Plant/DNA, Plant/*genetics

  • Source: BMC genomics [BMC Genomics] 2018 Dec 10; Vol. 19 (1), pp. 896. Date of Electronic Publication: 2018 Dec 10.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Genome-wide identification and characterization of long non-coding RNAs involved in the early somatic embryogenesis in Dimocarpus longan Lour.

  • Authors : Chen Y; Institute of Horticultural Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, 350002, Fujian, China.; Li X

Subjects: Gene Expression Regulation, Developmental* ; Gene Expression Regulation, Plant* ; Genome, Plant*

  • Source: BMC genomics [BMC Genomics] 2018 Nov 06; Vol. 19 (1), pp. 805. Date of Electronic Publication: 2018 Nov 06.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Construction of a high-density, high-quality genetic map of cultivated lotus (Nelumbo nucifera) using next-generation sequencing.

  • Authors : Liu Z; Institute of Vegetable, Wuhan Academy of Agriculture Science and Technology, Wuhan, Hubei, 430065, China.; Zhu H

Subjects: Chromosome Mapping* ; Genome, Plant* ; Genomics*/Genomics*/Genomics*/methods

  • Source: BMC genomics [BMC Genomics] 2016 Jun 17; Vol. 17, pp. 466. Date of Electronic Publication: 2016 Jun 17.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Genomic survey sequencing for development and validation of single-locus SSR markers in peanut (Arachis hypogaea L.).

  • Authors : Zhou X; Key Laboratory of Biology and Genetic Improvement of Oil Crops, Ministry of Agriculture, Oil Crops Research Institute of the Chinese Academy of Agricultural Sciences, Wuhan, 430062, Hubei, China.; Dong Y

Subjects: Genome, Plant* ; Genomics*/Genomics*/Genomics*/methods ; High-Throughput Nucleotide Sequencing*

  • Source: BMC genomics [BMC Genomics] 2016 Jun 01; Vol. 17, pp. 420. Date of Electronic Publication: 2016 Jun 01.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Evaluation of genetic variation among Brazilian soybean cultivars through genome resequencing.

  • Authors : Maldonado dos Santos JV; Brazilian Corporation of Agricultural Research (Embrapa Soja), Carlos João Strass road, Warta County, PR, Brazil. .; Londrina State University (UEL), Celso Garcia Cid Road, km 380, Londrina, PR, Brazil. .

Subjects: Genetic Variation* ; Genome, Plant* ; Genomics*/Genomics*/Genomics*/methods

  • Source: BMC genomics [BMC Genomics] 2016 Feb 13; Vol. 17, pp. 110. Date of Electronic Publication: 2016 Feb 13.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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