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Academic Journal

Comprehensive evaluation of structural variant genotyping methods based on long-read sequencing data.

  • Authors : Duan X; State Key Laboratory of Genetic Engineering, Human Phenome Institute, Zhangjiang Fudan International Innovation Center, Fudan University, Shanghai, 200438, China.; MOE Key Laboratory of Contemporary Anthropology, Department of Anthropology and Human Genetics, School of Life Sciences, Fudan University, Shanghai, 200433, China.

Subjects: Genomics*/Genomics*/Genomics*/methods ; High-Throughput Nucleotide Sequencing*; Genomic Structural Variation

  • Source: BMC genomics [BMC Genomics] 2022 Apr 23; Vol. 23 (1), pp. 324. Date of Electronic Publication: 2022 Apr 23.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Development of a versatile resource for post-genomic research through consolidating and characterizing 1500 diverse wild and cultivated soybean genomes.

  • Authors : Zhang H; Donald Danforth Plant Science Center, St Louis, MO 63132, USA.; Jiang H

Subjects: Genomics* ; Soybeans*/Soybeans*/Soybeans*/genetics; Chromosome Mapping

  • Source: BMC genomics [BMC Genomics] 2022 Mar 31; Vol. 23 (1), pp. 250. Date of Electronic Publication: 2022 Mar 31.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

kataegis: an R package for identification and visualization of the genomic localized hypermutation regions using high-throughput sequencing.

  • Authors : Lin X; Department of Bioinformatics, School of Biomedical Engineering and Informatics, Nanjing Medical University, 211166, Nanjing, People's Republic of China. .; Hua Y

Subjects: Genomics* ; High-Throughput Nucleotide Sequencing*; Mutation

  • Source: BMC genomics [BMC Genomics] 2021 Jun 12; Vol. 22 (1), pp. 440. Date of Electronic Publication: 2021 Jun 12.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Cruxome: a powerful tool for annotating, interpreting and reporting genetic variants.

  • Authors : Han Q; Berry Genomics Company Limited, Building 5, Courtyard 4, Shengmingyuan Road, ZGC Life Science Park, Changping District, 102200, Beijing, China.; Yang Y

Subjects: Genomics* ; High-Throughput Nucleotide Sequencing*; Algorithms

  • Source: BMC genomics [BMC Genomics] 2021 Jun 03; Vol. 22 (1), pp. 407. Date of Electronic Publication: 2021 Jun 03.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Enhancement of de novo sequencing, assembly and annotation of the Mongolian gerbil genome with transcriptome sequencing and assembly from several different tissues.

  • Authors : Cheng S; BGI-Shenzhen, Beishan Industrial Zone, Yantian District, Shenzhen, 518083, China.; State Key Laboratory of Agricultural Genomics, BGI-Shenzhen, Shenzhen, 51803, China.

Subjects: Computational Biology*/Computational Biology*/Computational Biology*/methods ; Genome* ; Genomics*/Genomics*/Genomics*/methods

  • Source: BMC genomics [BMC Genomics] 2019 Nov 27; Vol. 20 (1), pp. 903. Date of Electronic Publication: 2019 Nov 27.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Evaluation of strategies for the assembly of diverse bacterial genomes using MinION long-read sequencing.

  • Authors : Goldstein S; Department of Molecular and Cell Biology, University of Connecticut, Storrs, CT, USA.; Beka L

Subjects: Genomics* ; High-Throughput Nucleotide Sequencing*; Biosynthetic Pathways/Biosynthetic Pathways/Biosynthetic Pathways/*genetics

  • Source: BMC genomics [BMC Genomics] 2019 Jan 09; Vol. 20 (1), pp. 23. Date of Electronic Publication: 2019 Jan 09.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Completion of draft bacterial genomes by long-read sequencing of synthetic genomic pools.

  • Authors : Derakhshani H; Farncombe Family Digestive Health Research Institute, McMaster University, Hamilton, Ontario, Canada. .; Department of Medicine, McMaster University, Hamilton, Ontario, Canada. .

Subjects: Genome, Bacterial* ; Genomics*; High-Throughput Nucleotide Sequencing

  • Source: BMC genomics [BMC Genomics] 2020 Jul 29; Vol. 21 (1), pp. 519. Date of Electronic Publication: 2020 Jul 29.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Comparative genomics and pangenome-oriented studies reveal high homogeneity of the agronomically relevant enterobacterial plant pathogen Dickeya solani.

  • Authors : Motyka-Pomagruk A; Laboratory of Plant Protection and Biotechnology, Intercollegiate Faculty of Biotechnology University of Gdansk and Medical University of Gdansk, 58 Abrahama Street, 80-307, Gdansk, Poland.; Zoledowska S

Subjects: Dickeya/Dickeya/Dickeya/*pathogenicity ; Genomics/Genomics/Genomics/*methods ; Solanum tuberosum/Solanum tuberosum/Solanum tuberosum/*microbiology Dickeya solani

  • Source: BMC genomics [BMC Genomics] 2020 Jun 29; Vol. 21 (1), pp. 449. Date of Electronic Publication: 2020 Jun 29.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Comparative genomics of four strains of the edible brown alga, Cladosiphon okamuranus.

  • Authors : Nishitsuji K; Marine Genomics Unit, Okinawa Institute of Science and Technology Graduate University, Onna, Okinawa, 904-0495, Japan. .; Arimoto A

Subjects: Genomics/Genomics/Genomics/*methods ; Phaeophyta/Phaeophyta/Phaeophyta/*classification ; Seaweed/Seaweed/Seaweed/*genetics

  • Source: BMC genomics [BMC Genomics] 2020 Jun 26; Vol. 21 (1), pp. 422. Date of Electronic Publication: 2020 Jun 26.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

ExUTR: a novel pipeline for large-scale prediction of 3'-UTR sequences from NGS data.

  • Authors : Huang Z; UCD School of Biology and Environmental Science, University College Dublin, Belfield, Dublin 4, Ireland.; Teeling EC

Subjects: High-Throughput Nucleotide Sequencing* ; Sequence Analysis, RNA*; 3' Untranslated Regions/3' Untranslated Regions/3' Untranslated Regions/*genetics

  • Source: BMC genomics [BMC Genomics] 2017 Nov 06; Vol. 18 (1), pp. 847. Date of Electronic Publication: 2017 Nov 06.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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