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Academic Journal

Reducing costs for DNA and RNA sequencing by sample pooling using a metagenomic approach.

  • Authors : Teufel M; Philipps Universität Marburg, Synthetic Microbiology Center Marburg (SYNMIKRO), Marburg, 35043, Germany.; Sobetzko P

Subjects: Metagenome* ; Metagenomics*; DNA/DNA/DNA/genetics

  • Source: BMC genomics [BMC Genomics] 2022 Aug 24; Vol. 23 (1), pp. 613. Date of Electronic Publication: 2022 Aug 24.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

GalaxyTrakr: a distributed analysis tool for public health whole genome sequence data accessible to non-bioinformaticians.

  • Authors : Gangiredla J; Center for Food Safety and Applied Nutrition, U.S. Food and Drug Administration, 20708, Laurel, MD, USA. .; Rand H

Subjects: Metagenomics* ; Public Health*; Computational Biology

  • Source: BMC genomics [BMC Genomics] 2021 Feb 10; Vol. 22 (1), pp. 114. Date of Electronic Publication: 2021 Feb 10.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

MegaPath: sensitive and rapid pathogen detection using metagenomic NGS data.

  • Authors : Leung CM; Department of Computer Science, The University of Hong Kong, Pokfulam Road, Hong Kong, Hong Kong. .; L3 Bioinformatics Limited, Rm 2114, Hong Kong Plaza, 188 Connaught Road West, Sai Ying Pun, Hong Kong. .

Subjects: Metagenomics* ; Software*; Algorithms

  • Source: BMC genomics [BMC Genomics] 2020 Dec 21; Vol. 21 (Suppl 6), pp. 500. Date of Electronic Publication: 2020 Dec 21.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

The effect of antibiotics on the gut microbiome: a metagenomics analysis of microbial shift and gut antibiotic resistance in antibiotic treated mice.

  • Authors : Xu L; U. S. Food and Drug Administration, Center for Drug Evaluation and Research, Office of Translational Science, Office of Clinical Pharmacology, Division of Applied Regulatory Science, HFD-910, White Oak Federal Research Center, 10903 New Hampshire Ave, Silver Spring, MD, 20993, USA.; Surathu A

Subjects: Anti-Bacterial Agents/Anti-Bacterial Agents/Anti-Bacterial Agents/*pharmacology ; Metagenomics/Metagenomics/Metagenomics/*methods; Animals

  • Source: BMC genomics [BMC Genomics] 2020 Mar 30; Vol. 21 (1), pp. 263. Date of Electronic Publication: 2020 Mar 30.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

HumanMycobiomeScan: a new bioinformatics tool for the characterization of the fungal fraction in metagenomic samples.

  • Authors : Soverini M; Department of Pharmacy and Biotechnology, Unit of Microbial Ecology of Health, University of Bologna, Via Belmeloro 6, 40126, Bologna, Italy. .; Turroni S

Subjects: Software*; Fungi/Fungi/Fungi/*genetics ; Metagenomics/Metagenomics/Metagenomics/*methods

  • Source: BMC genomics [BMC Genomics] 2019 Jun 15; Vol. 20 (1), pp. 496. Date of Electronic Publication: 2019 Jun 15.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

MiCoP: microbial community profiling method for detecting viral and fungal organisms in metagenomic samples.

  • Authors : LaPierre N; Department of Computer Science, University of California, Los Angeles, 90095, CA, USA.; Mangul S

Subjects: Genetic Markers* ; Microbiota*; Computational Biology/Computational Biology/Computational Biology/*methods

  • Source: BMC genomics [BMC Genomics] 2019 Jun 06; Vol. 20 (Suppl 5), pp. 423. Date of Electronic Publication: 2019 Jun 06.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

From reference genomes to population genomics: comparing three reference-aligned reduced-representation sequencing pipelines in two wildlife species.

  • Authors : Wright B; Faculty of Science, The University of Sydney, School of Life and Environmental Sciences, Sydney, Australia.; Farquharson KA

Subjects: Genome* ; Polymorphism, Single Nucleotide*; Geese/Geese/Geese/*genetics

  • Source: BMC genomics [BMC Genomics] 2019 Jun 03; Vol. 20 (1), pp. 453. Date of Electronic Publication: 2019 Jun 03.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Signal enrichment with strain-level resolution in metagenomes using topological data analysis.

  • Authors : Guzmán-Sáenz A; Computational Biology Center, IBM T. J. Watson Research Center, Yorktown Heights, NY, USA.; Haiminen N

Subjects: Algorithms* ; Data Analysis* ; Metagenome*

  • Source: BMC genomics [BMC Genomics] 2019 Apr 04; Vol. 20 (Suppl 2), pp. 194. Date of Electronic Publication: 2019 Apr 04.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Estimating the total genome length of a metagenomic sample using k-mers.

  • Authors : Hua K; MOE Key Laboratory of Bioinformatics Division and Center for Synthetic & System Biology, BNRIST, Beijing, 100084, China.; Department of Automation, Tsinghua University, Beijing, 100084, China.

Subjects: Metagenome* ; Software*; Metagenomics/Metagenomics/Metagenomics/*methods

  • Source: BMC genomics [BMC Genomics] 2019 Apr 04; Vol. 20 (Suppl 2), pp. 183. Date of Electronic Publication: 2019 Apr 04.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Improving the sensitivity of long read overlap detection using grouped short k-mer matches.

  • Authors : Du N; Department of Computer Science and Engineering, Michigan State University, East Lansing, 48824, MI, USA.; Chen J

Subjects: Algorithms* ; Metagenomics* ; Software*

  • Source: BMC genomics [BMC Genomics] 2019 Apr 04; Vol. 20 (Suppl 2), pp. 190. Date of Electronic Publication: 2019 Apr 04.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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