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Academic Journal

Breed-specific reference sequence optimized mapping accuracy of NGS analyses for pigs.

  • Authors : Wang D; National Engineering Laboratory for Animal Breeding, Ministry of Agricultural Key Laboratory of Animal Genetics, Breeding and Reproduction, College of Animal Science and Technology, China Agricultural University, Beijing, China.; College of Animal Science and Technology, Shandong Agricultural University, Tai'an, China.

Subjects: High-Throughput Nucleotide Sequencing* ; Polymorphism, Single Nucleotide*; Animals

  • Source: BMC genomics [BMC Genomics] 2021 Oct 12; Vol. 22 (1), pp. 736. Date of Electronic Publication: 2021 Oct 12.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Systematic benchmark of state-of-the-art variant calling pipelines identifies major factors affecting accuracy of coding sequence variant discovery.

  • Authors : Barbitoff YA; Bioinformatics Institute, St. Petersburg, Russia. .; Department of Genomic Medicine, D.O. Ott Research Institute of Obstetrics, Gynaecology and Reproductology, St. Petersburg, Russia. .

Subjects: Benchmarking* ; Polymorphism, Single Nucleotide*; Exome

  • Source: BMC genomics [BMC Genomics] 2022 Feb 22; Vol. 23 (1), pp. 155. Date of Electronic Publication: 2022 Feb 22.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Investigation of genetic relationships within three Miscanthus species using SNP markers identified with SLAF-seq.

  • Authors : Chen Z; College of Bioscience & Biotechnology, Hunan Agricultural University, Changsha, 410128, PR China. .; Hunan Engineering Laboratory of Miscanthus Ecological Applications, Hunan Agricultural University, Changsha, 410128, PR China. .

Subjects: Poaceae*/Poaceae*/Poaceae*/genetics ; Polymorphism, Single Nucleotide*; Asia

  • Source: BMC genomics [BMC Genomics] 2022 Jan 10; Vol. 23 (1), pp. 43. Date of Electronic Publication: 2022 Jan 10.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Red panda: a novel method for detecting variants in single-cell RNA sequencing.

  • Authors : Cornish A; Department of Genetics, Cell Biology and Anatomy, University of Nebraska Medical Center, Omaha, NE, 68198, USA.; Roychoudhury S

Subjects: Fibroblasts* ; Polymorphism, Single Nucleotide*; Animals

  • Source: BMC genomics [BMC Genomics] 2020 Dec 29; Vol. 21 (Suppl 11), pp. 830. Date of Electronic Publication: 2020 Dec 29.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

A comparison of BeadChip and WGS genotyping outputs using partial validation by sanger sequencing.

  • Authors : Danilov KA; Atlas Biomed Group Limited, Tintagel House, 92 Albert Embankment, Lambeth, London, SE1 7TY, UK. .; Skolkovo Institute of Science and Technology, Bolshoy Boulevard 30, bld. 1, 121205, Moscow, Russia. .

Subjects: Genotyping Techniques* ; Polymorphism, Single Nucleotide*; Genome

  • Source: BMC genomics [BMC Genomics] 2020 Sep 10; Vol. 21 (Suppl 7), pp. 528. Date of Electronic Publication: 2020 Sep 10.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Replication origin location might contribute to genetic variability in Trypanosoma cruzi.

  • Authors : de Araujo CB; Laboratório de Ciclo Celular, Instituto Butantan, São Paulo, Brazil.; Center of Toxins, Immune Response and Cell Signaling (CeTICS), Instituto Butantan, São Paulo, Brazil.

Subjects: Polymorphism, Single Nucleotide* ; Replication Origin*; Trypanosoma cruzi/Trypanosoma cruzi/Trypanosoma cruzi/*genetics

  • Source: BMC genomics [BMC Genomics] 2020 Jun 22; Vol. 21 (1), pp. 414. Date of Electronic Publication: 2020 Jun 22.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

SMaSH: Sample matching using SNPs in humans.

  • Authors : Westphal M; Interdisciplinary Biophysics Graduate Program, The Ohio State University, 484 W. 12th Avenue, Columbus, 43210, OH, USA.; Frankhouser D

Subjects: Software*; Genomics/Genomics/Genomics/*methods ; Polymorphism, Single Nucleotide/Polymorphism, Single Nucleotide/Polymorphism, Single Nucleotide/*genetics

  • Source: BMC genomics [BMC Genomics] 2019 Dec 30; Vol. 20 (Suppl 12), pp. 1001. Date of Electronic Publication: 2019 Dec 30.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

The discrepancy among single nucleotide variants detected by DNA and RNA high throughput sequencing data.

  • Authors : Guo Y; Department of Biomedical Informatics, Vanderbilt University, 2220 Pierce Ave, 571 PRB, Nashville, TN, 37027, USA. .; Zhao S

Subjects: High-Throughput Nucleotide Sequencing* ; Polymorphism, Single Nucleotide* ; Sequence Analysis, DNA*

  • Source: BMC genomics [BMC Genomics] 2017 Oct 03; Vol. 18 (Suppl 6), pp. 690. Date of Electronic Publication: 2017 Oct 03.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

From reference genomes to population genomics: comparing three reference-aligned reduced-representation sequencing pipelines in two wildlife species.

  • Authors : Wright B; Faculty of Science, The University of Sydney, School of Life and Environmental Sciences, Sydney, Australia.; Farquharson KA

Subjects: Genome* ; Polymorphism, Single Nucleotide*; Geese/Geese/Geese/*genetics

  • Source: BMC genomics [BMC Genomics] 2019 Jun 03; Vol. 20 (1), pp. 453. Date of Electronic Publication: 2019 Jun 03.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Genetic diversity of avocado (Persea americana Mill.) germplasm using pooled sequencing.

  • Authors : Rubinstein M; Department of Fruit Trees Sciences, Institute of Plant Sciences, Agricultural Research Organization, Volcani Center, Rishon Lezion, Israel.; Eshed R

Subjects: Genetics, Population* ; Genome, Plant* ; Polymorphism, Single Nucleotide*

  • Source: BMC genomics [BMC Genomics] 2019 May 15; Vol. 20 (1), pp. 379. Date of Electronic Publication: 2019 May 15.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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