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Academic Journal

A comparison between whole transcript and 3' RNA sequencing methods using Kapa and Lexogen library preparation methods.

  • Authors : Ma F; Molecular Biology Institute, University of California, Los Angeles, California, USA.; Fuqua BK

Subjects: High-Throughput Nucleotide Sequencing*; 3' Untranslated Regions/3' Untranslated Regions/3' Untranslated Regions/*genetics ; RNA, Messenger/RNA, Messenger/RNA, Messenger/*genetics

  • Source: BMC genomics [BMC Genomics] 2019 Jan 07; Vol. 20 (1), pp. 9. Date of Electronic Publication: 2019 Jan 07.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Genome‑wide integrated analysis demonstrates widespread functions of lncRNAs in mammary gland development and lactation in dairy goats.

  • Authors : Ji Z; Shandong Provincial Key Laboratory of Animal Biotechnology and Disease Control and Prevention, Shandong Agricultural University, 61 Daizong Street, Taian City, Shandong Province, 271018, People's Republic of China.; Chao T

Subjects: Goats/Goats/Goats/*metabolism ; Lactation/Lactation/Lactation/*metabolism ; Mammary Glands, Animal/Mammary Glands, Animal/Mammary Glands, Animal/*metabolism

  • Source: BMC genomics [BMC Genomics] 2020 Mar 23; Vol. 21 (1), pp. 254. Date of Electronic Publication: 2020 Mar 23.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Identification and integrated analysis of glyphosate stress-responsive microRNAs, lncRNAs, and mRNAs in rice using genome-wide high-throughput sequencing.

  • Authors : Zhai R; Institute of Crop and Nuclear Technology Utilization, Zhejiang Academy of Agricultural Sciences, 198, Shiqiao Road, Hangzhou, 310021, Zhejiang, China.; Ye S

Subjects: MicroRNAs/MicroRNAs/MicroRNAs/*genetics ; Oryza/Oryza/Oryza/*genetics ; RNA, Long Noncoding/RNA, Long Noncoding/RNA, Long Noncoding/*genetics

  • Source: BMC genomics [BMC Genomics] 2020 Mar 17; Vol. 21 (1), pp. 238. Date of Electronic Publication: 2020 Mar 17.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Variation and evolution of polyadenylation profiles in sauropsid mitochondrial mRNAs as deduced from the high-throughput RNA sequencing.

  • Authors : Sun Y; Department of Information and Basic Science and Research Center for Biological Diversity, Graduate School of Natural Sciences, Nagoya City University, 1 Yamanohata, Mizuho-cho, Mizuho-ku, Nagoya, 467-8501, Japan.; Kurisaki M

Subjects: Evolution, Molecular* ; Genetic Variation* ; High-Throughput Nucleotide Sequencing*

  • Source: BMC genomics [BMC Genomics] 2017 Aug 29; Vol. 18 (1), pp. 665. Date of Electronic Publication: 2017 Aug 29.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Integrated analysis of long non-coding RNA and mRNA expression in different colored skin of koi carp.

  • Authors : Luo M; Wuxi Fisheries College, Nanjing Agricultural University, Wuxi, 214081, Jiangsu, China.; Wang L

Subjects: Carps/Carps/Carps/*genetics ; RNA, Long Noncoding/RNA, Long Noncoding/RNA, Long Noncoding/*biosynthesis ; RNA, Messenger/RNA, Messenger/RNA, Messenger/*biosynthesis

  • Source: BMC genomics [BMC Genomics] 2019 Jun 21; Vol. 20 (1), pp. 515. Date of Electronic Publication: 2019 Jun 21.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

RiboStreamR: a web application for quality control, analysis, and visualization of Ribo-seq data.

  • Authors : Perkins P; Bioinformatics Research Center, North Carolina State University, Raleigh, NC, 27607, USA.; Mazzoni-Putman S

Subjects: Software* ; Web Browser*; High-Throughput Nucleotide Sequencing/High-Throughput Nucleotide Sequencing/High-Throughput Nucleotide Sequencing/*methods

  • Source: BMC genomics [BMC Genomics] 2019 Jun 06; Vol. 20 (Suppl 5), pp. 422. Date of Electronic Publication: 2019 Jun 06.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Cardiomyogenic differentiation is fine-tuned by differential mRNA association with polysomes.

  • Authors : Pereira IT; Basic Stem-cell Biology Laboratory, Instituto Carlos Chagas - FIOCRUZ-PR, Rua Professor Algacyr Munhoz Mader, 3775, Curitiba, PR, 81.350-010, Brazil.; Spangenberg L

Subjects: Cell Differentiation* ; Gene Expression Regulation*; Biomarkers/Biomarkers/Biomarkers/*analysis

  • Source: BMC genomics [BMC Genomics] 2019 Mar 15; Vol. 20 (1), pp. 219. Date of Electronic Publication: 2019 Mar 15.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

FRAMA: from RNA-seq data to annotated mRNA assemblies.

  • Authors : Bens M; Leibniz Institute on Ageing - Fritz Lipmann Institute, Beutenbergstr. 11, 07745, Jena, Germany. .; Sahm A

Subjects: High-Throughput Nucleotide Sequencing* ; Software*; RNA, Messenger/RNA, Messenger/RNA, Messenger/*genetics

  • Source: BMC genomics [BMC Genomics] 2016 Jan 14; Vol. 17, pp. 54. Date of Electronic Publication: 2016 Jan 14.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Comparison of normalization and differential expression analyses using RNA-Seq data from 726 individual Drosophila melanogaster.

  • Authors : Lin Y; Laboratory of Systems Genetics, Center for Systems Biology, National Heart Lung and Blood Institute, 10 Center Drive, MSC 1640, Bethesda, MD, 20892, USA. .; Golovnina K

Subjects: Gene Expression Regulation* ; High-Throughput Nucleotide Sequencing*; Drosophila melanogaster/Drosophila melanogaster/Drosophila melanogaster/*genetics

  • Source: BMC genomics [BMC Genomics] 2016 Jan 05; Vol. 17, pp. 28. Date of Electronic Publication: 2016 Jan 05.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Combined ultra-low input mRNA and whole-genome sequencing of human embryonic stem cells.

  • Authors : Mertes F; Department of Vertebrate Genomics, Max Planck Institute for Molecular Genetics, Ihnestr. 63-73, 14195, Berlin, Germany. .; Molecular Exposomics, Helmholtz Zentrum München, Ingolstädter Landstr. 1, 85764, Neuherberg, Germany. .

Subjects: Genome, Human* ; Genomics*/Genomics*/Genomics*/methods ; High-Throughput Nucleotide Sequencing*

  • Source: BMC genomics [BMC Genomics] 2015 Nov 12; Vol. 16, pp. 925. Date of Electronic Publication: 2015 Nov 12.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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