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Academic Journal

Capture of complete ciliate chromosomes in single sequencing reads reveals widespread chromosome isoforms.

  • Authors : Lindblad KA; Departments of Biochemistry & Molecular Biophysics and Biological Sciences, Columbia University, New York, NY, 10032, USA.; Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, 08544, USA.

Subjects: Chromosomes* ; Genetic Variation* ; High-Throughput Nucleotide Sequencing*

  • Source: BMC genomics [BMC Genomics] 2019 Dec 30; Vol. 20 (1), pp. 1037. Date of Electronic Publication: 2019 Dec 30.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

2C-ChIP: measuring chromatin immunoprecipitation signal from defined genomic regions with deep sequencing.

  • Authors : Wang XQD; Department of Biochemistry and Rosalind & Morris Goodman Cancer Research Center, McGill University, Montréal, Québec, H3G 1Y6, Canada.; Cameron CJF

Subjects: High-Throughput Nucleotide Sequencing* ; Sequence Analysis, DNA*; Chromatin Immunoprecipitation/Chromatin Immunoprecipitation/Chromatin Immunoprecipitation/*methods

  • Source: BMC genomics [BMC Genomics] 2019 Feb 28; Vol. 20 (1), pp. 162. Date of Electronic Publication: 2019 Feb 28.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Genomic nucleotide-based distance analysis for delimiting old world monkey derived herpes simplex virus species.

  • Authors : Kolb AW; Department of Ophthalmology and Visual Sciences, School of Medicine and Public Health, University of Wisconsin-Madison, 550 Bardeen Laboratories, 1300 University Ave, Madison, WI, 53706, USA. .; Brandt CR

Subjects: Cercopithecidae/Cercopithecidae/Cercopithecidae/*virology ; Computational Biology/Computational Biology/Computational Biology/*methods ; Sequence Analysis, DNA/Sequence Analysis, DNA/Sequence Analysis, DNA/*methods

  • Source: BMC genomics [BMC Genomics] 2020 Jun 26; Vol. 21 (1), pp. 436. Date of Electronic Publication: 2020 Jun 26.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Unique, dual-indexed sequencing adapters with UMIs effectively eliminate index cross-talk and significantly improve sensitivity of massively parallel sequencing.

  • Authors : MacConaill LE; Center for Cancer Genome Discovery, DFCI, 450 Brookline Avenue, Dana840b, Boston, MA, 02215, USA.; Department of Pathology, Brigham and Women's Hospital, Boston, MA, USA.

Subjects: High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/methods ; High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/standards ; Sequence Analysis, DNA*/Sequence Analysis, DNA*/Sequence Analysis, DNA*/methods

  • Source: BMC genomics [BMC Genomics] 2018 Jan 08; Vol. 19 (1), pp. 30. Date of Electronic Publication: 2018 Jan 08.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

High-sensitivity HLA typing by Saturated Tiling Capture Sequencing (STC-Seq).

  • Authors : Jiao Y; Life Sciences Institute and Innovation Center for Cell Signaling Network, Zhejiang University, Hangzhou, Zhejiang, 310058, People's Republic of China.; Li R

Subjects: High-Throughput Nucleotide Sequencing* ; Sequence Analysis, DNA*; Histocompatibility Testing/Histocompatibility Testing/Histocompatibility Testing/*methods

  • Source: BMC genomics [BMC Genomics] 2018 Jan 15; Vol. 19 (1), pp. 50. Date of Electronic Publication: 2018 Jan 15.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

HLA genotyping by next-generation sequencing of complementary DNA.

  • Authors : Segawa H; Department of Molecular and Medical Genetics, Research Institute, Osaka Medical Center for Cancer and Cardiovascular Diseases, 1-3-3 Nakamichi, Higashinari-ku, Osaka, 537-8511, Japan.; Kukita Y

Subjects: High-Throughput Nucleotide Sequencing* ; Sequence Analysis, DNA*; DNA, Complementary/DNA, Complementary/DNA, Complementary/*chemistry

  • Source: BMC genomics [BMC Genomics] 2017 Nov 28; Vol. 18 (1), pp. 914. Date of Electronic Publication: 2017 Nov 28.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Tracy: basecalling, alignment, assembly and deconvolution of sanger chromatogram trace files.

  • Authors : Rausch T; European Molecular Biology Laboratory (EMBL), Genomics Core Facility, Heidelberg, 69117, Germany. .; European Molecular Biology Laboratory (EMBL), Genome Biology Unit, Heidelberg, 69117, Germany. .

Subjects: Computational Biology/Computational Biology/Computational Biology/*methods ; Sequence Analysis, DNA/Sequence Analysis, DNA/Sequence Analysis, DNA/*methods; High-Throughput Nucleotide Sequencing/High-Throughput Nucleotide Sequencing/High-Throughput Nucleotide Sequencing/methods

  • Source: BMC genomics [BMC Genomics] 2020 Mar 14; Vol. 21 (1), pp. 230. Date of Electronic Publication: 2020 Mar 14.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

InvBFM: finding genomic inversions from high-throughput sequence data based on feature mining.

  • Authors : Wu Z; College of Information Science and Technology, Beijing University of Chemical Technology, Beijing, People's Republic of China.; Wu Y

Subjects: Sequence Inversion*; Computational Biology/Computational Biology/Computational Biology/*methods ; Sequence Analysis, DNA/Sequence Analysis, DNA/Sequence Analysis, DNA/*methods

  • Source: BMC genomics [BMC Genomics] 2020 Mar 05; Vol. 21 (Suppl 1), pp. 173. Date of Electronic Publication: 2020 Mar 05.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Comparative chloroplast genomics of the genus Taxodium.

  • Authors : Duan H; Jiangsu Engineering Research Center for Taxodium Rich, Germplasm Innovation and Propagation, Institute of Botany, Jiangsu Province and Chinese Academy of Sciences (Nanjing Botanical Garden Mem, Sun Yat-Sen), Nanjing, China.; Guo J

Subjects: Chloroplasts/Chloroplasts/Chloroplasts/*genetics ; Sequence Analysis, DNA/Sequence Analysis, DNA/Sequence Analysis, DNA/*methods ; Taxodium/Taxodium/Taxodium/*classification

  • Source: BMC genomics [BMC Genomics] 2020 Jan 31; Vol. 21 (1), pp. 114. Date of Electronic Publication: 2020 Jan 31.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Comparison of multiple algorithms to reliably detect structural variants in pears.

  • Authors : Liu Y; Center of Pear Engineering Technology Research, State Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Nanjing, 210095, Jiangsu, China.; Zhang M

Subjects: Algorithms* ; Genetic Variation* ; Software*

  • Source: BMC genomics [BMC Genomics] 2020 Jan 20; Vol. 21 (1), pp. 61. Date of Electronic Publication: 2020 Jan 20.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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