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Academic Journal

Dual indexed library design enables compatibility of in-Drop single-cell RNA-sequencing with exAMP chemistry sequencing platforms.

  • Authors : Southard-Smith AN; Epithelial Biology Center and Department of Cell and Developmental Biology, Vanderbilt University School of Medicine, Nashville, TN, USA.; Simmons AJ

Subjects: High-Throughput Nucleotide Sequencing*; Sequence Analysis, RNA/Sequence Analysis, RNA/Sequence Analysis, RNA/*methods ; Single-Cell Analysis/Single-Cell Analysis/Single-Cell Analysis/*methods

  • Source: BMC genomics [BMC Genomics] 2020 Jul 02; Vol. 21 (1), pp. 456. Date of Electronic Publication: 2020 Jul 02.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

High-throughput sequencing of circRNAs reveals novel insights into mechanisms of nigericin in pancreatic cancer.

  • Authors : Xu Z; Department of General Surgery, The First Affiliated Hospital of Soochow University, Suzhou, 215006, China.; Shen J

Subjects: High-Throughput Nucleotide Sequencing* ; Sequence Analysis, RNA*; Antineoplastic Agents/Antineoplastic Agents/Antineoplastic Agents/*pharmacology

  • Source: BMC genomics [BMC Genomics] 2019 Sep 18; Vol. 20 (1), pp. 716. Date of Electronic Publication: 2019 Sep 18.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

A comparison between whole transcript and 3' RNA sequencing methods using Kapa and Lexogen library preparation methods.

  • Authors : Ma F; Molecular Biology Institute, University of California, Los Angeles, California, USA.; Fuqua BK

Subjects: High-Throughput Nucleotide Sequencing*; 3' Untranslated Regions/3' Untranslated Regions/3' Untranslated Regions/*genetics ; RNA, Messenger/RNA, Messenger/RNA, Messenger/*genetics

  • Source: BMC genomics [BMC Genomics] 2019 Jan 07; Vol. 20 (1), pp. 9. Date of Electronic Publication: 2019 Jan 07.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Systematic comparison of small RNA library preparation protocols for next-generation sequencing.

  • Authors : Dard-Dascot C; Institute for Integrative Biology of the Cell, UMR9198, CNRS CEA Univ Paris-Sud, Université Paris-Saclay, 9198, Gif sur Yvette Cedex, France.; Naquin D

Subjects: Computational Biology*/Computational Biology*/Computational Biology*/methods ; Gene Library* ; High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/methods

  • Source: BMC genomics [BMC Genomics] 2018 Feb 05; Vol. 19 (1), pp. 118. Date of Electronic Publication: 2018 Feb 05.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Comparative analysis of circular RNAs between soybean cytoplasmic male-sterile line NJCMS1A and its maintainer NJCMS1B by high-throughput sequencing.

  • Authors : Chen L; Soybean Research Institute, National Center for Soybean Improvement, Key Laboratory of Biology and Genetic Improvement of Soybean (General, Ministry of Agriculture), State Key Laboratory of Crop Genetics and Germplasm Enhancement, Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing, 210095, China.; Ding X

Subjects: High-Throughput Nucleotide Sequencing* ; Sequence Analysis, RNA*; Cytoplasm/Cytoplasm/Cytoplasm/*genetics

  • Source: BMC genomics [BMC Genomics] 2018 Sep 12; Vol. 19 (1), pp. 663. Date of Electronic Publication: 2018 Sep 12.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Diversity and signature of small RNA in different bodily fluids using next generation sequencing.

  • Authors : El-Mogy M; Norgen Biotek Corp, Thorold, ON, L2V 4Y6, Canada. .; Molecular Biology Department, National Research Centre, Dokki, Giza, Egypt. .

Subjects: Genetic Variation* ; High-Throughput Nucleotide Sequencing* ; Sequence Analysis, RNA*

  • Source: BMC genomics [BMC Genomics] 2018 May 29; Vol. 19 (1), pp. 408. Date of Electronic Publication: 2018 May 29.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Effect of short term diet restriction on gene expression in the bovine hypothalamus using next generation RNA sequencing technology.

  • Authors : Matthews D; Animal and Grassland Research and Innovation Centre, Teagasc, Mellows Campus, Athenry, Co. Galway, Ireland.; School of Agriculture and Food Science, University College Dublin, Belfield, Dublin 4, Ireland.

Subjects: High-Throughput Nucleotide Sequencing* ; Sequence Analysis, RNA*; Diet/Diet/Diet/*adverse effects

  • Source: BMC genomics [BMC Genomics] 2017 Nov 09; Vol. 18 (1), pp. 857. Date of Electronic Publication: 2017 Nov 09.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

ExUTR: a novel pipeline for large-scale prediction of 3'-UTR sequences from NGS data.

  • Authors : Huang Z; UCD School of Biology and Environmental Science, University College Dublin, Belfield, Dublin 4, Ireland.; Teeling EC

Subjects: High-Throughput Nucleotide Sequencing* ; Sequence Analysis, RNA*; 3' Untranslated Regions/3' Untranslated Regions/3' Untranslated Regions/*genetics

  • Source: BMC genomics [BMC Genomics] 2017 Nov 06; Vol. 18 (1), pp. 847. Date of Electronic Publication: 2017 Nov 06.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Stable intronic sequence RNAs (sisRNAs) are selected regions in introns with distinct properties.

  • Authors : Jin J; Department of Physiology, School of Basic Medicine, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, 430030, Hubei, China.; Department of Biology, Georgetown University, 37th and O Sts, NW, Washington DC, 20057, USA.

Subjects: Cell Nucleus/Cell Nucleus/Cell Nucleus/*genetics ; RNA, Untranslated/RNA, Untranslated/RNA, Untranslated/*genetics ; Sequence Analysis, RNA/Sequence Analysis, RNA/Sequence Analysis, RNA/*methods

  • Source: BMC genomics [BMC Genomics] 2020 Apr 07; Vol. 21 (1), pp. 287. Date of Electronic Publication: 2020 Apr 07.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

A comparison of RNA extraction and sequencing protocols for detection of small RNAs in plasma.

  • Authors : Wong RKY; Centre for Experimental Medicine, School of Medicine, Dentistry and Biomedical Sciences, Queen's University Belfast, 97 Lisburn Road, Belfast, BT9 7BL, UK.; MacMahon M

Subjects: Gene Library*; Biomarkers/Biomarkers/Biomarkers/*blood ; High-Throughput Nucleotide Sequencing/High-Throughput Nucleotide Sequencing/High-Throughput Nucleotide Sequencing/*methods

  • Source: BMC genomics [BMC Genomics] 2019 Jun 03; Vol. 20 (1), pp. 446. Date of Electronic Publication: 2019 Jun 03.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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