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Academic Journal

High-throughput transcriptome sequencing reveals the key stages of cardiovascular development in zebrafish embryos.

  • Authors : Zhou C; College of Life Science, Henan Normal University, Xinxiang, 453007, Henan, China.; Zhao W

Subjects: Biological Phenomena* ; Transcriptome*; Animals

  • Source: BMC genomics [BMC Genomics] 2022 Aug 13; Vol. 23 (1), pp. 587. Date of Electronic Publication: 2022 Aug 13.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Optimization of library preparation based on SMART for ultralow RNA-seq in mice brain tissues.

  • Authors : Jia E; State Key Laboratory of Bioelectronics, School of Biological Science & Medical Engineering, Southeast University, Nanjing, 210096, China.; Shi H

Subjects: High-Throughput Nucleotide Sequencing* ; Transcriptome*; Animals

  • Source: BMC genomics [BMC Genomics] 2021 Nov 10; Vol. 22 (1), pp. 809. Date of Electronic Publication: 2021 Nov 10.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

A comparison of mRNA sequencing (RNA-Seq) library preparation methods for transcriptome analysis.

  • Authors : Ura H; Center for Clinical Genomics, Kanazawa Medical University Hospital, 1-1 Daigaku, Uchinada, Kahoku, Ishikawa, 920-0923, Japan. .; Division of Genomic Medicine, Department of Advanced Medicine, Medical Research Institute, Kanazawa Medical University, 1-1 Daigaku, Uchinada, Kahoku, Ishikawa, 920-0923, Japan. .

Subjects: Gene Expression Profiling*/Gene Expression Profiling*/Gene Expression Profiling*/methods ; Transcriptome*; Alternative Splicing

  • Source: BMC genomics [BMC Genomics] 2022 Apr 13; Vol. 23 (1), pp. 303. Date of Electronic Publication: 2022 Apr 13.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Genion, an accurate tool to detect gene fusion from long transcriptomics reads.

  • Authors : Karaoglanoglu F; School of Computing Science, Simon Fraser University, Burnaby, BC, Canada.; Vancouver Prostate Centre, Vancouver, BC, Canada.

Subjects: Software* ; Transcriptome*; Gene Fusion

  • Source: BMC genomics [BMC Genomics] 2022 Feb 14; Vol. 23 (1), pp. 129. Date of Electronic Publication: 2022 Feb 14.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Assembly-free rapid differential gene expression analysis in non-model organisms using DNA-protein alignment.

  • Authors : Shrestha AMS; Bioinformatics Lab, Advanced Research Institute for Informatics, Computing, and Networking (AdRIC), De La Salle University, Manila, Philippines. .; Department of Software Technology, College of Computer Studies, De La Salle University, Manila, Philippines. .

Subjects: Gene Expression Profiling* ; Transcriptome*; DNA

  • Source: BMC genomics [BMC Genomics] 2022 Feb 04; Vol. 23 (1), pp. 97. Date of Electronic Publication: 2022 Feb 04.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Comparative performance of the GenoLab M and NovaSeq 6000 sequencing platforms for transcriptome and LncRNA analysis.

  • Authors : Liu Y; GeneMind Biosciences Company Limited, ShenZhen, China.; Han R

Subjects: RNA, Long Noncoding*/RNA, Long Noncoding*/RNA, Long Noncoding*/genetics ; Transcriptome*; Gene Library

  • Source: BMC genomics [BMC Genomics] 2021 Nov 17; Vol. 22 (1), pp. 829. Date of Electronic Publication: 2021 Nov 17.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Unveiling the transcriptomic complexity of Miscanthus sinensis using a combination of PacBio long read- and Illumina short read sequencing platforms.

  • Authors : Wang Y; Biofuels Institute, School of the Environment and Safety Engineering, Jiangsu University, 212013, Zhenjiang, Jiangsu, China.; Li X

Subjects: Saccharum* ; Transcriptome*; Alternative Splicing

  • Source: BMC genomics [BMC Genomics] 2021 Sep 22; Vol. 22 (1), pp. 690. Date of Electronic Publication: 2021 Sep 22.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Automation of Spatial Transcriptomics library preparation to enable rapid and robust insights into spatial organization of tissues.

  • Authors : Berglund E; Science for Life Laboratory, Department of Gene Technology, School of Engineering Sciences in Chemistry, Biotechnology and Health, KTH Royal Institute of Technology, Solna, Sweden.; Saarenpää S

Subjects: Transcriptome*; Gene Expression Regulation/Gene Expression Regulation/Gene Expression Regulation/*genetics ; High-Throughput Nucleotide Sequencing/High-Throughput Nucleotide Sequencing/High-Throughput Nucleotide Sequencing/*methods

  • Source: BMC genomics [BMC Genomics] 2020 Apr 15; Vol. 21 (1), pp. 298. Date of Electronic Publication: 2020 Apr 15.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Full-length transcriptome sequences of Agropyron cristatum facilitate the prediction of putative genes for thousand-grain weight in a wheat-A. cristatum translocation line.

  • Authors : Zhou S; National Key Facility for Crop Gene Resources and Genetic Improvement, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100081, China.; Zhang J

Subjects: Genes, Plant* ; High-Throughput Nucleotide Sequencing* ; Quantitative Trait, Heritable*

  • Source: BMC genomics [BMC Genomics] 2019 Dec 27; Vol. 20 (1), pp. 1025. Date of Electronic Publication: 2019 Dec 27.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Enhancement of de novo sequencing, assembly and annotation of the Mongolian gerbil genome with transcriptome sequencing and assembly from several different tissues.

  • Authors : Cheng S; BGI-Shenzhen, Beishan Industrial Zone, Yantian District, Shenzhen, 518083, China.; State Key Laboratory of Agricultural Genomics, BGI-Shenzhen, Shenzhen, 51803, China.

Subjects: Computational Biology*/Computational Biology*/Computational Biology*/methods ; Genome* ; Genomics*/Genomics*/Genomics*/methods

  • Source: BMC genomics [BMC Genomics] 2019 Nov 27; Vol. 20 (1), pp. 903. Date of Electronic Publication: 2019 Nov 27.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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