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Academic Journal

MethylStar: A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing data.

  • Authors : Shahryary Y; Technical University of Munich, Institute for Advanced Study (IAS), Lichtenbergstr. 2a, Garching, 85748, Germany.; Technical University of Munich, Department of Plant Sciences, Liesel-Beckmann-Str. 2, Freising, 85354, Germany.

Subjects: DNA Methylation* ; Software* ; Sulfites*

  • Source: BMC genomics [BMC Genomics] 2020 Jul 13; Vol. 21 (1), pp. 479. Date of Electronic Publication: 2020 Jul 13.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Genetic dissection of an allotetraploid interspecific CSSLs guides interspecific genetics and breeding in cotton.

  • Authors : Zhu; National Key Laboratory of Crop Genetic Improvement, College of Plant Sciences & Technology, Huazhong Agricultural University, Wuhan, 430070, Hubei, China.; Li X

Subjects: Genetic Introgression* ; Quantitative Trait Loci*; Gossypium/Gossypium/Gossypium/*anatomy & histology

  • Source: BMC genomics [BMC Genomics] 2020 Jun 26; Vol. 21 (1), pp. 431. Date of Electronic Publication: 2020 Jun 26.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Genomic and transcriptomic survey of an endophytic fungus Calcarisporium arbuscula NRRL 3705 and potential overview of its secondary metabolites.

  • Authors : Cheng JT; Institute of Pharmaceutical Biotechnology, School of Medicine, Zhejiang University, Hangzhou, 310058, China.; Zhejiang Provincial Key Laboratory for Microbial Biochemistry and Metabolic Engineering, Hangzhou, 310058, China.

Subjects: Fungal Proteins/Fungal Proteins/Fungal Proteins/*genetics ; Gene Expression Profiling/Gene Expression Profiling/Gene Expression Profiling/*methods ; Hypocreales/Hypocreales/Hypocreales/*genetics Calcarisporium arbuscula

  • Source: BMC genomics [BMC Genomics] 2020 Jun 24; Vol. 21 (1), pp. 424. Date of Electronic Publication: 2020 Jun 24.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Replication origin location might contribute to genetic variability in Trypanosoma cruzi.

  • Authors : de Araujo CB; Laboratório de Ciclo Celular, Instituto Butantan, São Paulo, Brazil.; Center of Toxins, Immune Response and Cell Signaling (CeTICS), Instituto Butantan, São Paulo, Brazil.

Subjects: Polymorphism, Single Nucleotide* ; Replication Origin*; Trypanosoma cruzi/Trypanosoma cruzi/Trypanosoma cruzi/*genetics

  • Source: BMC genomics [BMC Genomics] 2020 Jun 22; Vol. 21 (1), pp. 414. Date of Electronic Publication: 2020 Jun 22.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Comparative chloroplast genome analysis of Artemisia (Asteraceae) in East Asia: insights into evolutionary divergence and phylogenomic implications.

  • Authors : Kim GB; Department of Bioscience and Bioinformatics, Myongji University, Yongin, 17058, Korea.; Lim CE

Subjects: Artemisia/Artemisia/Artemisia/*classification ; Chloroplasts/Chloroplasts/Chloroplasts/*genetics ; Whole Genome Sequencing/Whole Genome Sequencing/Whole Genome Sequencing/*methods

  • Source: BMC genomics [BMC Genomics] 2020 Jun 22; Vol. 21 (1), pp. 415. Date of Electronic Publication: 2020 Jun 22.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Complete genome sequence and annotation of the laboratory reference strain Shigella flexneri serotype 5a M90T and genome-wide transcriptional start site determination.

  • Authors : Cervantes-Rivera R; The Laboratory for Molecular Infection Medicine Sweden (MIMS), 901 87 Umeå, Sweden.; Umeå Centre for Microbial Research (UCMR), 901 87, Umeå, Sweden.

Subjects: Gene Expression Profiling/Gene Expression Profiling/Gene Expression Profiling/*methods ; Molecular Sequence Annotation/Molecular Sequence Annotation/Molecular Sequence Annotation/*methods ; Shigella flexneri/Shigella flexneri/Shigella flexneri/*genetics

  • Source: BMC genomics [BMC Genomics] 2020 Apr 06; Vol. 21 (1), pp. 285. Date of Electronic Publication: 2020 Apr 06.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Whole-genome sequencing of Puccinia striiformis f. sp. tritici mutant isolates identifies avirulence gene candidates.

  • Authors : Li Y; Department of Plant Pathology, Washington State University, Pullman, WA, 99164-6430, USA.; Xia C

Subjects: Mutation*; Basidiomycota/Basidiomycota/Basidiomycota/*pathogenicity ; Whole Genome Sequencing/Whole Genome Sequencing/Whole Genome Sequencing/*methods

  • Source: BMC genomics [BMC Genomics] 2020 Mar 20; Vol. 21 (1), pp. 247. Date of Electronic Publication: 2020 Mar 20.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Comparative genomic analysis reveals high intra-serovar plasticity within Salmonella Napoli isolated in 2005-2017.

  • Authors : Mastrorilli E; Istituto Zooprofilattico Sperimentale delle Venezie, Microbial Ecology Unit, Legnaro, Italy.; Present address: European Molecular Biology Laboratory, Structural and Computational Biology Unit, Heidelberg, Germany.

Subjects: DNA, Bacterial/DNA, Bacterial/DNA, Bacterial/*genetics ; Salmonella Infections/Salmonella Infections/Salmonella Infections/*microbiology ; Salmonella enterica/Salmonella enterica/Salmonella enterica/*classification

  • Source: BMC genomics [BMC Genomics] 2020 Mar 04; Vol. 21 (1), pp. 202. Date of Electronic Publication: 2020 Mar 04.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Whole genome resequencing of the Iranian native dogs and wolves to unravel variome during dog domestication.

  • Authors : Amiri Ghanatsaman Z; Department of Animal Science, Faculty of Agriculture, Shahid Bahonar University of Kerman, PB 76169-133, Kerman, Iran.; Yong Researchers Society, Shahid Bahonar University of Kerman, PB 76169-133, Kerman, Iran.

Subjects: Dogs/Dogs/Dogs/*genetics ; Pets/Pets/Pets/*genetics ; Whole Genome Sequencing/Whole Genome Sequencing/Whole Genome Sequencing/*veterinary

  • Source: BMC genomics [BMC Genomics] 2020 Mar 04; Vol. 21 (1), pp. 207. Date of Electronic Publication: 2020 Mar 04.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Genomic analysis of the four ecologically distinct cactus host populations of Drosophila mojavensis.

  • Authors : Allan CW; Department of Biological Sciences, University of Alabama in Huntsville, 301 Sparkman Drive, Huntsville, AL, 35899, USA.; Department of Entomology, University of Arizona, 1140 E. South Campus Drive, Tucson, AZ, 85721, USA.

Subjects: Cactaceae/Cactaceae/Cactaceae/*parasitology ; Drosophila/Drosophila/Drosophila/*physiology ; Drosophila Proteins/Drosophila Proteins/Drosophila Proteins/*genetics

  • Source: BMC genomics [BMC Genomics] 2019 Oct 12; Vol. 20 (1), pp. 732. Date of Electronic Publication: 2019 Oct 12.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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