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Academic Journal

Genetic subtypes, allelic effects, and convergent neurodevelopmental mechanisms.

  • Authors : Das M; Department of Biochemistry and Molecular Biology and of Anthropology, Pennsylvania State University, 205A Life Sciences Building, University Park, PA, 16802, USA.; Girirajan S

Subjects: Alleles* ; Genetic Predisposition to Disease*; Neurodevelopmental Disorders/Neurodevelopmental Disorders/Neurodevelopmental Disorders/*genetics

  • Source: Genome medicine [Genome Med] 2021 Jun 07; Vol. 13 (1), pp. 99. Date of Electronic Publication: 2021 Jun 07.Publisher: BioMed Central Country of Publication: England NLM ID: 101475844 Publication Model: Electronic Cited Medium:

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Academic Journal

India Allele Finder: a web-based annotation tool for identifying common alleles in next-generation sequencing data of Indian origin.

  • Authors : Zhang JF; Center for Neurotherapeutics Development, University of Rochester Medical Center, Rochester, NY, USA.; Rochester Institute of Technology, Rochester, NY, USA.

Subjects: Alleles* ; Genome, Human* ; High-Throughput Nucleotide Sequencing*

  • Source: BMC research notes [BMC Res Notes] 2017 Jun 27; Vol. 10 (1), pp. 233. Date of Electronic Publication: 2017 Jun 27.Publisher: Biomed Central Country of Publication: England NLM ID: 101462768 Publication Model: Electronic Cited Medium:

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Academic Journal

2.7 million samples genotyped for HLA by next generation sequencing: lessons learned.

  • Authors : Schöfl G; DKMS Life Science Lab, Blasewitzerstr. 43, 01307, Dresden, Germany. .; Lang K

Subjects: Alleles* ; Genotype* ; High-Throughput Nucleotide Sequencing*

  • Source: BMC genomics [BMC Genomics] 2017 Feb 14; Vol. 18 (1), pp. 161. Date of Electronic Publication: 2017 Feb 14.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Genomic landscape of colorectal cancer in Japan: clinical implications of comprehensive genomic sequencing for precision medicine.

  • Authors : Nagahashi M; Division of Digestive and General Surgery, Niigata University Graduate School of Medical and Dental Sciences, 1-757 Asahimachi-dori, Chuo-ku, Niigata City, Niigata, 951-8510, Japan.; Wakai T

Subjects: Alleles* ; Databases, Genetic* ; Exome*

  • Source: Genome medicine [Genome Med] 2016 Dec 22; Vol. 8 (1), pp. 136. Date of Electronic Publication: 2016 Dec 22.Publisher: BioMed Central Country of Publication: England NLM ID: 101475844 Publication Model: Electronic Cited Medium:

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Academic Journal

Purge Haplotigs: allelic contig reassignment for third-gen diploid genome assemblies.

  • Authors : Roach MJ; The Australian Wine Research Institute, PO Box 197, Glen Osmond, SA, 5064, Australia. .; Schmidt SA

Subjects: Alleles* ; Contig Mapping* ; Diploidy*

  • Source: BMC bioinformatics [BMC Bioinformatics] 2018 Nov 29; Vol. 19 (1), pp. 460. Date of Electronic Publication: 2018 Nov 29.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium:

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Academic Journal

hsegHMM: hidden Markov model-based allele-specific copy number alteration analysis accounting for hypersegmentation.

  • Authors : Choo-Wosoba H; Biostatistics Branch, Division of Cancer Epidemiology and Genetics, National Cancer Institute, National Institutes of Health, Bethesda, MD, 20892, USA.; Albert PS

Subjects: Alleles*; DNA Copy Number Variations/DNA Copy Number Variations/DNA Copy Number Variations/*genetics ; High-Throughput Nucleotide Sequencing/High-Throughput Nucleotide Sequencing/High-Throughput Nucleotide Sequencing/*methods

  • Source: BMC bioinformatics [BMC Bioinformatics] 2018 Nov 14; Vol. 19 (1), pp. 424. Date of Electronic Publication: 2018 Nov 14.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium:

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Academic Journal

High-specificity detection of rare alleles with Paired-End Low Error Sequencing (PELE-Seq).

  • Authors : Preston JL; Institute of Molecular Biology, University of Oregon, Eugene, Oregon, USA. .; Royall AE

Subjects: Alleles*; High-Throughput Nucleotide Sequencing/High-Throughput Nucleotide Sequencing/High-Throughput Nucleotide Sequencing/*methods; Escherichia coli/Escherichia coli/Escherichia coli/genetics

  • Source: BMC genomics [BMC Genomics] 2016 Jun 14; Vol. 17, pp. 464. Date of Electronic Publication: 2016 Jun 14.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Mutation allele frequency threshold does not affect prognostic analysis using next-generation sequencing in oral squamous cell carcinoma.

  • Authors : Ma J; Department of Oral & Maxillofacial-Head & Neck Oncology, Ninth People's Hospital, Shanghai Jiao Tong University School of Medicine, No 639, Zhizaoju Rd, Shanghai, 200011, China.; Fu Y

Subjects: Alleles* ; Mutation*; High-Throughput Nucleotide Sequencing/High-Throughput Nucleotide Sequencing/High-Throughput Nucleotide Sequencing/*methods

  • Source: BMC cancer [BMC Cancer] 2018 Jul 24; Vol. 18 (1), pp. 758. Date of Electronic Publication: 2018 Jul 24.Publisher: BioMed Central Country of Publication: England NLM ID: 100967800 Publication Model: Electronic Cited Medium:

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Academic Journal

Estimating copy numbers of alleles from population-scale high-throughput sequencing data.

Subjects: Alleles* ; High-Throughput Nucleotide Sequencing*; Computational Biology/Computational Biology/Computational Biology/*methods

  • Source: BMC bioinformatics [BMC Bioinformatics] 2015; Vol. 16 Suppl 1, pp. S4. Date of Electronic Publication: 2015 Jan 21.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Print-Electronic Cited Medium:

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Academic Journal

PyHLA: tests for the association between HLA alleles and diseases.

  • Authors : Fan Y; School of Biomedical Sciences, The University of Hong Kong, 21 Sassoon Road, Pokfulam, Hong Kong, Hong Kong.; Centre for Genomic Sciences, The University of Hong Kong, 5 Sassoon Road, Pokfulam, Hong Kong, Hong Kong.

Subjects: Alleles* ; Software*; Computational Biology/Computational Biology/Computational Biology/*methods

  • Source: BMC bioinformatics [BMC Bioinformatics] 2017 Feb 06; Vol. 18 (1), pp. 90. Date of Electronic Publication: 2017 Feb 06.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium:

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