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Academic Journal

gcaPDA: a haplotype-resolved diploid assembler.

  • Authors : Xie M; Guangdong Engineering Research Center of Plant and Animal Genomics, BGI Genomics, BGI-Shenzhen, Shenzhen, 518083, China.; Yang L

Subjects: Chromosomes* ; Diploidy*; Alleles

  • Source: BMC bioinformatics [BMC Bioinformatics] 2022 Feb 14; Vol. 23 (1), pp. 68. Date of Electronic Publication: 2022 Feb 14.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium:

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Academic Journal

Capture of complete ciliate chromosomes in single sequencing reads reveals widespread chromosome isoforms.

  • Authors : Lindblad KA; Departments of Biochemistry & Molecular Biophysics and Biological Sciences, Columbia University, New York, NY, 10032, USA.; Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, 08544, USA.

Subjects: Chromosomes* ; Genetic Variation* ; High-Throughput Nucleotide Sequencing*

  • Source: BMC genomics [BMC Genomics] 2019 Dec 30; Vol. 20 (1), pp. 1037. Date of Electronic Publication: 2019 Dec 30.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Network-based method for regions with statistically frequent interchromosomal interactions at single-cell resolution.

Subjects: Chromosomes/Chromosomes/Chromosomes/*metabolism ; Single-Cell Analysis/Single-Cell Analysis/Single-Cell Analysis/*methods; Animals

  • Source: BMC bioinformatics [BMC Bioinformatics] 2020 Sep 30; Vol. 21 (Suppl 14), pp. 369. Date of Electronic Publication: 2020 Sep 30.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium:

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Academic Journal

Microdissection of lampbrush chromosomes as an approach for generation of locus-specific FISH-probes and samples for high-throughput sequencing.

  • Authors : Zlotina A; Department of Cytology and Histology, Saint Petersburg State University, Saint Petersburg, Russia. .; Kulikova T

Subjects: DNA Probes* ; High-Throughput Nucleotide Sequencing* ; In Situ Hybridization, Fluorescence*

  • Source: BMC genomics [BMC Genomics] 2016 Feb 20; Vol. 17, pp. 126. Date of Electronic Publication: 2016 Feb 20.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

GraphTeams: a method for discovering spatial gene clusters in Hi-C sequencing data.

  • Authors : Schulz T; Faculty of Technology and CeBiTec, Bielefeld University, Universitätsstr. 25, Bielefeld, 33615, Germany.; International Research Training Group 1906 'Computational Methods for the Analysis of the Diversity and Dynamics of Genomes', Universitätsstr. 25, Bielefeld, 33615, Germany.

Subjects: Algorithms* ; Computer Graphics* ; Multigene Family*

  • Source: BMC genomics [BMC Genomics] 2018 May 08; Vol. 19 (Suppl 5), pp. 308. Date of Electronic Publication: 2018 May 08.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Reconstruction of 3D genome architecture via a two-stage algorithm.

  • Authors : Segal MR; Division of Bioinformatics, Department of Epidemiology and Biostatistics, University of California, 550 16th Street, San Francisco, 94158, CA, USA. .; Bengtsson HL

Subjects: Algorithms* ; Genome* ; Molecular Conformation*

  • Source: BMC bioinformatics [BMC Bioinformatics] 2015 Nov 09; Vol. 16, pp. 373. Date of Electronic Publication: 2015 Nov 09.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium:

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Academic Journal

Efficient high-throughput sequencing of a laser microdissected chromosome arm.

Subjects: Lasers* ; Microdissection*; Chromosomes/Chromosomes/Chromosomes/*genetics

  • Source: BMC genomics [BMC Genomics] 2013 May 28; Vol. 14, pp. 357. Date of Electronic Publication: 2013 May 28.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Massively-parallel sequencing of genes on a single chromosome: a comparison of solution hybrid selection and flow sorting.

Subjects: Chromosomes/Chromosomes/Chromosomes/*genetics ; Flow Cytometry/Flow Cytometry/Flow Cytometry/*methods ; High-Throughput Nucleotide Sequencing/High-Throughput Nucleotide Sequencing/High-Throughput Nucleotide Sequencing/*methods

  • Source: BMC genomics [BMC Genomics] 2013 Apr 15; Vol. 14, pp. 253. Date of Electronic Publication: 2013 Apr 15.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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