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Academic Journal

ECCsplorer: a pipeline to detect extrachromosomal circular DNA (eccDNA) from next-generation sequencing data.

  • Authors : Mann L; Institute of Botany, Technische Universität Dresden, 01069, Dresden, Germany.; Seibt KM

Subjects: DNA*/DNA*/DNA*/genetics ; DNA, Circular*/DNA, Circular*/DNA, Circular*/genetics; Chromosomes

  • Source: BMC bioinformatics [BMC Bioinformatics] 2022 Jan 14; Vol. 23 (1), pp. 40. Date of Electronic Publication: 2022 Jan 14.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium:

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Academic Journal

Noninvasive prenatal paternity determination using microhaplotypes: a pilot study.

  • Authors : Wang JYT; Department of Clinical Toxicological Analyzes, School of Pharmaceutical Sciences, University of São Paulo, São Paulo, Brazil.; Whittle MR

Subjects: Genetic Markers* ; Haplotypes* ; Paternity*

  • Source: BMC medical genomics [BMC Med Genomics] 2020 Oct 23; Vol. 13 (1), pp. 157. Date of Electronic Publication: 2020 Oct 23.Publisher: BioMed Central Country of Publication: England NLM ID: 101319628 Publication Model: Electronic Cited Medium:

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Academic Journal

GPU acceleration of Darwin read overlapper for de novo assembly of long DNA reads.

  • Authors : Ahmed N; Delft University of Technology, Delft, Netherlands. .; University of Engineering and Technology Lahore, Lahore, Pakistan. .

Subjects: Algorithms*; DNA/DNA/DNA/*genetics ; High-Throughput Nucleotide Sequencing/High-Throughput Nucleotide Sequencing/High-Throughput Nucleotide Sequencing/*methods

  • Source: BMC bioinformatics [BMC Bioinformatics] 2020 Sep 17; Vol. 21 (Suppl 13), pp. 388. Date of Electronic Publication: 2020 Sep 17.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium:

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Academic Journal

Performance evaluation of commercial library construction kits for PCR-based targeted sequencing using a unique molecular identifier.

  • Authors : Chung J; Samsung Genome Institute, Samsung Medical Center, Seoul, 06351, South Korea.; Department of Molecular Cell Biology, Sungkyunkwan University School of Medicine, Suwon, 16419, South Korea.

Subjects: Gene Library*; Biomarkers/Biomarkers/Biomarkers/*analysis ; DNA/DNA/DNA/*analysis

  • Source: BMC genomics [BMC Genomics] 2019 Mar 14; Vol. 20 (1), pp. 216. Date of Electronic Publication: 2019 Mar 14.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Detection of fetal trisomy and single gene disease by massively parallel sequencing of extracellular vesicle DNA in maternal plasma: a proof-of-concept validation.

  • Authors : Zhang W; BGI-Shenzhen, Beishan Industrial Zone, Shenzhen, 518083, China.; China National GeneBank, BGI-Shenzhen, Shenzhen, 518120, China.

Subjects: Trisomy*; DNA/DNA/DNA/*genetics ; Extracellular Vesicles/Extracellular Vesicles/Extracellular Vesicles/*genetics

  • Source: BMC medical genomics [BMC Med Genomics] 2019 Nov 04; Vol. 12 (1), pp. 151. Date of Electronic Publication: 2019 Nov 04.Publisher: BioMed Central Country of Publication: England NLM ID: 101319628 Publication Model: Electronic Cited Medium:

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Academic Journal

A model of pulldown alignments from SssI-treated DNA improves DNA methylation prediction.

  • Authors : Moreland BS; Department of Physics, The Ohio State University, Columbus, OH, USA.; Present address: Institute for Genomic Medicine, Nationwide Children's Hospital, Columbus, OH,, USA.

Subjects: Models, Biological* ; Sequence Alignment*; Computational Biology/Computational Biology/Computational Biology/*methods

  • Source: BMC bioinformatics [BMC Bioinformatics] 2019 Aug 19; Vol. 20 (1), pp. 431. Date of Electronic Publication: 2019 Aug 19.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium:

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Academic Journal

Optimized PCR conditions minimizing the formation of chimeric DNA molecules from MPRA plasmid libraries.

  • Authors : Omelina ES; Institute of Molecular and Cellular Biology SB RAS, Novosibirsk, Russia.; Ivankin AV

Subjects: Gene Library* ; Plasmids*; DNA/DNA/DNA/*genetics

  • Source: BMC genomics [BMC Genomics] 2019 Jul 11; Vol. 20 (Suppl 7), pp. 536. Date of Electronic Publication: 2019 Jul 11.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

NanoMod: a computational tool to detect DNA modifications using Nanopore long-read sequencing data.

  • Authors : Liu Q; Raymond G. Perelman Center for Cellular and Molecular Therapeutics, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA.; Georgieva DC

Subjects: DNA*/DNA*/DNA*/chemistry ; DNA*/DNA*/DNA*/genetics ; DNA*/DNA*/DNA*/metabolism

  • Source: BMC genomics [BMC Genomics] 2019 Feb 04; Vol. 20 (Suppl 1), pp. 78. Date of Electronic Publication: 2019 Feb 04.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Barcode identification for single cell genomics.

  • Authors : Tambe A; Division of Biology and Biological Engineering, California Institute of Technology, 116 Kerckhoff Laboratory, Pasadena, CA, 91125, USA.; Pachter L

Subjects: DNA/DNA/DNA/*genetics ; Genomics/Genomics/Genomics/*methods ; High-Throughput Nucleotide Sequencing/High-Throughput Nucleotide Sequencing/High-Throughput Nucleotide Sequencing/*methods

  • Source: BMC bioinformatics [BMC Bioinformatics] 2019 Jan 17; Vol. 20 (1), pp. 32. Date of Electronic Publication: 2019 Jan 17.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium:

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Academic Journal

Exploring the unmapped DNA and RNA reads in a songbird genome.

  • Authors : Laine VN; Department of Animal Ecology, NIOO-KNAW, Wageningen, The Netherlands. .; Gossmann TI

Subjects: DNA/DNA/DNA/*genetics ; Genome/Genome/Genome/*genetics ; RNA/RNA/RNA/*genetics

  • Source: BMC genomics [BMC Genomics] 2019 Jan 08; Vol. 20 (1), pp. 19. Date of Electronic Publication: 2019 Jan 08.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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