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Academic Journal

Repeatability of methylation measures using a QIAseq targeted methyl panel and comparison with the Illumina HumanMethylation450 assay.

  • Authors : Yu C; Precision Medicine, School of Clinical Sciences at Monash Health, Monash University, Victoria, Australia.; Dugué PA

Subjects: DNA Methylation* ; High-Throughput Nucleotide Sequencing*; Genomics

  • Source: BMC research notes [BMC Res Notes] 2021 Oct 24; Vol. 14 (1), pp. 394. Date of Electronic Publication: 2021 Oct 24.Publisher: Biomed Central Country of Publication: England NLM ID: 101462768 Publication Model: Electronic Cited Medium:

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Academic Journal

Genome-wide analysis of cell-Free DNA methylation profiling with MeDIP-seq identified potential biomarkers for colorectal cancer.

  • Authors : Zhang X; Department of General Surgery, Qingpu Branch of Zhongshan Hospital Affiliated to Fudan University, No. 1158 Gongyuan East Road, Qingpu District, Shanghai, 201700, China.; Li T

Subjects: Colorectal Neoplasms*/Colorectal Neoplasms*/Colorectal Neoplasms*/genetics ; DNA Methylation*; Biomarkers

  • Source: World journal of surgical oncology [World J Surg Oncol] 2022 Jan 22; Vol. 20 (1), pp. 21. Date of Electronic Publication: 2022 Jan 22.Publisher: BioMed Central Country of Publication: England NLM ID: 101170544 Publication Model: Electronic Cited Medium:

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Academic Journal

New targeted approaches for epigenetic age predictions.

  • Authors : Han Y; Helmholtz-Institute for Biomedical Engineering, Stem Cell Biology and Cellular Engineering, RWTH Aachen University Medical School, Pauwelsstraße 20, 52074, Aachen, Germany.; Institute for Biomedical Engineering - Cell Biology, University Hospital of RWTH Aachen, Aachen, Germany.

Subjects: DNA Methylation* ; High-Throughput Nucleotide Sequencing*; Aging/Aging/Aging/*genetics

  • Source: BMC biology [BMC Biol] 2020 Jun 24; Vol. 18 (1), pp. 71. Date of Electronic Publication: 2020 Jun 24.Publisher: BioMed Central Country of Publication: England NLM ID: 101190720 Publication Model: Electronic Cited Medium:

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Academic Journal

Characterizing the properties of bisulfite sequencing data: maximizing power and sensitivity to identify between-group differences in DNA methylation.

  • Authors : Seiler Vellame D; College of Medicine and Health, University of Exeter, Royal Devon and Exeter Hospital, Exeter, EX2 5DW, UK. .; Castanho I

Subjects: DNA Methylation* ; Sulfites*; Epigenomics

  • Source: BMC genomics [BMC Genomics] 2021 Jun 15; Vol. 22 (1), pp. 446. Date of Electronic Publication: 2021 Jun 15.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

MethylStar: A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing data.

  • Authors : Shahryary Y; Technical University of Munich, Institute for Advanced Study (IAS), Lichtenbergstr. 2a, Garching, 85748, Germany.; Technical University of Munich, Department of Plant Sciences, Liesel-Beckmann-Str. 2, Freising, 85354, Germany.

Subjects: DNA Methylation* ; Software* ; Sulfites*

  • Source: BMC genomics [BMC Genomics] 2020 Jul 13; Vol. 21 (1), pp. 479. Date of Electronic Publication: 2020 Jul 13.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Validation of differentially methylated microRNAs identified from an epigenome-wide association study; Sanger and next generation sequencing approaches.

  • Authors : Smyth LJ; Genetic Epidemiology Research Group, Centre for Public Health, Queen's University of Belfast, Belfast, UK. .; Maxwell AP

Subjects: DNA Methylation* ; Genome-Wide Association Study* ; High-Throughput Nucleotide Sequencing*

  • Source: BMC research notes [BMC Res Notes] 2018 Oct 29; Vol. 11 (1), pp. 767. Date of Electronic Publication: 2018 Oct 29.Publisher: Biomed Central Country of Publication: England NLM ID: 101462768 Publication Model: Electronic Cited Medium:

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Academic Journal

"Same difference": comprehensive evaluation of four DNA methylation measurement platforms.

  • Authors : Kacmarczyk TJ; Division of Hematology/Oncology, Department of Medicine, Epigenomics Core Facility, Weill Cornell Medicine, New York, NY, USA. .; Fall MP

Subjects: DNA Methylation*; High-Throughput Nucleotide Sequencing/High-Throughput Nucleotide Sequencing/High-Throughput Nucleotide Sequencing/*instrumentation ; Sequence Analysis, DNA/Sequence Analysis, DNA/Sequence Analysis, DNA/*instrumentation

  • Source: Epigenetics & chromatin [Epigenetics Chromatin] 2018 May 25; Vol. 11 (1), pp. 21. Date of Electronic Publication: 2018 May 25.Publisher: BioMed Central Country of Publication: England NLM ID: 101471619 Publication Model: Electronic Cited Medium:

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Academic Journal

RELIC: a novel dye-bias correction method for Illumina Methylation BeadChip.

  • Authors : Xu Z; Epidemiology Branch, National Institute of Environmental Health Sciences, NIH, Research Triangle Park, NC, USA.; Langie SA

Subjects: DNA Methylation* ; High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/methods ; High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/standards

  • Source: BMC genomics [BMC Genomics] 2017 Jan 03; Vol. 18 (1), pp. 4. Date of Electronic Publication: 2017 Jan 03.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

A model of pulldown alignments from SssI-treated DNA improves DNA methylation prediction.

  • Authors : Moreland BS; Department of Physics, The Ohio State University, Columbus, OH, USA.; Present address: Institute for Genomic Medicine, Nationwide Children's Hospital, Columbus, OH,, USA.

Subjects: Models, Biological* ; Sequence Alignment*; Computational Biology/Computational Biology/Computational Biology/*methods

  • Source: BMC bioinformatics [BMC Bioinformatics] 2019 Aug 19; Vol. 20 (1), pp. 431. Date of Electronic Publication: 2019 Aug 19.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium:

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Academic Journal

Methods for discovering genomic loci exhibiting complex patterns of differential methylation.

  • Authors : Hardcastle TJ; Department of Plant Sciences, University of Cambridge, Downing Street, Cambridge, CB2 3EA, UK. .

Subjects: DNA Methylation* ; High-Throughput Nucleotide Sequencing* ; Sequence Analysis, DNA*

  • Source: BMC bioinformatics [BMC Bioinformatics] 2017 Sep 18; Vol. 18 (1), pp. 416. Date of Electronic Publication: 2017 Sep 18.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium:

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