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Academic Journal

The infant gut resistome is associated with E. coli and early-life exposures.

  • Authors : Lebeaux RM; Department of Epidemiology, Geisel School of Medicine at Dartmouth, Hanover, NH, USA. .; Department of Microbiology & Immunology, Geisel School of Medicine at Dartmouth, Hanover, NH, USA. .

Subjects: Bacteria/Bacteria/Bacteria/*classification ; Bacteria/Bacteria/Bacteria/*genetics ; Drug Resistance, Microbial/Drug Resistance, Microbial/Drug Resistance, Microbial/*genetics

  • Source: BMC microbiology [BMC Microbiol] 2021 Jul 02; Vol. 21 (1), pp. 201. Date of Electronic Publication: 2021 Jul 02.Publisher: BioMed Central Country of Publication: England NLM ID: 100966981 Publication Model: Electronic Cited Medium:

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Academic Journal

MicroPIPE: validating an end-to-end workflow for high-quality complete bacterial genome construction.

  • Authors : Murigneux V; QCIF Facility for Advanced Bioinformatics, Institute for Molecular Bioscience, The University of Queensland, Brisbane, Queensland, Australia.; Roberts LW

Subjects: Escherichia coli* ; Genome, Bacterial*; Computational Biology

  • Source: BMC genomics [BMC Genomics] 2021 Jun 25; Vol. 22 (1), pp. 474. Date of Electronic Publication: 2021 Jun 25.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Evolutionary dynamics and structural consequences of de novo beneficial mutations and mutant lineages arising in a constant environment.

  • Authors : Kinnersley M; Division of Biological Sciences, The University of Montana, Missoula, MT, 59812, USA.; Schwartz K

Subjects: Evolution, Molecular* ; Mutation* ; Selection, Genetic*

  • Source: BMC biology [BMC Biol] 2021 Feb 04; Vol. 19 (1), pp. 20. Date of Electronic Publication: 2021 Feb 04.Publisher: BioMed Central Country of Publication: England NLM ID: 101190720 Publication Model: Electronic Cited Medium:

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Academic Journal

Nanopore sequencing reveals genomic map of CTX-M-type extended-spectrum β-lactamases carried by Escherichia coli strains isolated from blue mussels (Mytilus edulis) in Norway.

  • Authors : Grevskott DH; Department of Contaminants and Biohazards, Institute of Marine Research (IMR), Bergen, Norway.; Salvà-Serra F

Subjects: Chromosome Mapping/Chromosome Mapping/Chromosome Mapping/*methods ; Escherichia coli/Escherichia coli/Escherichia coli/*genetics ; Escherichia coli Infections/Escherichia coli Infections/Escherichia coli Infections/*veterinary

  • Source: BMC microbiology [BMC Microbiol] 2020 May 25; Vol. 20 (1), pp. 134. Date of Electronic Publication: 2020 May 25.Publisher: BioMed Central Country of Publication: England NLM ID: 100966981 Publication Model: Electronic Cited Medium:

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Academic Journal

Comparison of microbiomes in ulcerative and normal mucosa of recurrent aphthous stomatitis (RAS)-affected patients.

  • Authors : Yang Z; State Key Laboratory of Microbial Technology, Qilu Hospital, Shandong University, Qingdao, Shandong, China.; Cui Q

Subjects: Microbiota*; Escherichia coli/Escherichia coli/Escherichia coli/*isolation & purification ; Mouth Mucosa/Mouth Mucosa/Mouth Mucosa/*microbiology

  • Source: BMC oral health [BMC Oral Health] 2020 Apr 29; Vol. 20 (1), pp. 128. Date of Electronic Publication: 2020 Apr 29.Publisher: BioMed Central Country of Publication: England NLM ID: 101088684 Publication Model: Electronic Cited Medium:

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Academic Journal

The next generation of biopanning: next gen sequencing improves analysis of bacterial display libraries.

  • Authors : Stellwagen SD; Biotechnology Branch, CCDC US Army Research Laboratory, 2800 Powder Mill Rd, Adelphi, 20783, MD, USA.; Department of Biological Sciences, University of Maryland Baltimore County, 1000 Hilltop Circle, Baltimore, 21250, MD, USA.

Subjects: Peptide Library*; Bioprospecting/Bioprospecting/Bioprospecting/*methods ; Escherichia coli/Escherichia coli/Escherichia coli/*genetics

  • Source: BMC biotechnology [BMC Biotechnol] 2019 Dec 21; Vol. 19 (1), pp. 100. Date of Electronic Publication: 2019 Dec 21.Publisher: BioMed Central Country of Publication: England NLM ID: 101088663 Publication Model: Electronic Cited Medium:

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Report

Towards precision quantification of contamination in metagenomic sequencing experiments.

  • Authors : Zinter MS; Department of Pediatrics, Division of Critical Care, University of California, San Francisco School of Medicine, Benioff Children's Hospital, San Francisco, CA, USA.; Mayday MY

Subjects: Escherichia coli* ; Metagenomics*; DNA, Bacterial

  • Source: Microbiome [Microbiome] 2019 Apr 16; Vol. 7 (1), pp. 62. Date of Electronic Publication: 2019 Apr 16.Publisher: BioMed Central Country of Publication: England NLM ID: 101615147 Publication Model: Electronic Cited Medium:

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Academic Journal

Improving the sensitivity of long read overlap detection using grouped short k-mer matches.

  • Authors : Du N; Department of Computer Science and Engineering, Michigan State University, East Lansing, 48824, MI, USA.; Chen J

Subjects: Algorithms* ; Metagenomics* ; Software*

  • Source: BMC genomics [BMC Genomics] 2019 Apr 04; Vol. 20 (Suppl 2), pp. 190. Date of Electronic Publication: 2019 Apr 04.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Assessing the impact of exact reads on reducing the error rate of read mapping.

  • Authors : Salari F; Mathematics and Computer Science Department, Amirkabir University of Technology (Tehran polytechnic), Tehran, Iran.; Zare-Mirakabad F

Subjects: Algorithms* ; Genome, Bacterial*; Computational Biology/Computational Biology/Computational Biology/*methods

  • Source: BMC bioinformatics [BMC Bioinformatics] 2018 Nov 06; Vol. 19 (1), pp. 406. Date of Electronic Publication: 2018 Nov 06.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium:

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Academic Journal

An evolutionary optimization of a rhodopsin-based phototrophic metabolism in Escherichia coli.

  • Authors : Kim HA; Hana Academy Seoul, Seoul, Republic of Korea.; Department of Biological Sciences, Seoul National University, Seoul, Republic of Korea.

Subjects: Phototrophic Processes*; Directed Molecular Evolution/Directed Molecular Evolution/Directed Molecular Evolution/*methods ; Escherichia coli/Escherichia coli/Escherichia coli/*genetics

  • Source: Microbial cell factories [Microb Cell Fact] 2017 Jun 15; Vol. 16 (1), pp. 111. Date of Electronic Publication: 2017 Jun 15.Publisher: BioMed Central Country of Publication: England NLM ID: 101139812 Publication Model: Electronic Cited Medium:

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