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Academic Journal

HGGA: hierarchical guided genome assembler.

  • Authors : Walve R; Department of Computer Science, Helsinki Institute for Information Technology HIIT, University of Helsinki, Helsinki, Finland.; Salmela L

Subjects: Genome* ; High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/methods; Sequence Analysis, DNA/Sequence Analysis, DNA/Sequence Analysis, DNA/methods

  • Source: BMC bioinformatics [BMC Bioinformatics] 2022 May 07; Vol. 23 (1), pp. 167. Date of Electronic Publication: 2022 May 07.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium:

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Academic Journal

TC-hunter: identification of the insertion site of a transgenic gene within the host genome.

Subjects: Genome* ; High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/methods; Animals

  • Source: BMC genomics [BMC Genomics] 2022 Feb 20; Vol. 23 (1), pp. 149. Date of Electronic Publication: 2022 Feb 20.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Optimization of enzymatic fragmentation is crucial to maximize genome coverage: a comparison of library preparation methods for Illumina sequencing.

  • Authors : Ribarska T; Department Medical Genetics, Oslo University Hospital and University of Oslo, Kirkeveien 166, 0450, Oslo, Norway.; Bjørnstad PM

Subjects: Genome* ; High-Throughput Nucleotide Sequencing*; Gene Library

  • Source: BMC genomics [BMC Genomics] 2022 Feb 01; Vol. 23 (1), pp. 92. Date of Electronic Publication: 2022 Feb 01.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

SnakeCube: containerized and automated pipeline for de novo genome assembly in HPC environments.

  • Authors : Angelova N; Hellenic Centre for Marine Research (HCMR), Former U.S. Base of Gournes, Institute of Marine Biology, Biotechnology and Aquaculture (IMBBC), P.O. Box 2214, 71003, Heraklion, Crete, Greece.; Danis T

Subjects: Genome*/Genome*/Genome*/genetics ; Software*; Algorithms

  • Source: BMC research notes [BMC Res Notes] 2022 Mar 07; Vol. 15 (1), pp. 98. Date of Electronic Publication: 2022 Mar 07.Publisher: Biomed Central Country of Publication: England NLM ID: 101462768 Publication Model: Electronic Cited Medium:

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Academic Journal

Instance-based error correction for short reads of disease-associated genes.

  • Authors : Zhang X; Advanced Analytics Institute, Faculty of Engineering and IT, University of Technology Sydney, Ultimo, NSW, 2007, Australia.; Liu Y

Subjects: Genome* ; High-Throughput Nucleotide Sequencing*; Algorithms

  • Source: BMC bioinformatics [BMC Bioinformatics] 2021 Jun 02; Vol. 22 (Suppl 6), pp. 142. Date of Electronic Publication: 2021 Jun 02.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium:

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Academic Journal

Efficient iterative Hi-C scaffolder based on N-best neighbors.

  • Authors : Guan D; Center for Bioinformatics, Harbin Institute of Technology, Harbin, 150001, China.; Department of Genetics, University of Cambridge, Cambridge, CB2 3EH, UK.

Subjects: Genome* ; Genomics*; Chromosomes/Chromosomes/Chromosomes/genetics

  • Source: BMC bioinformatics [BMC Bioinformatics] 2021 Nov 27; Vol. 22 (1), pp. 569. Date of Electronic Publication: 2021 Nov 27.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium:

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Academic Journal

trioPhaser: using Mendelian inheritance logic to improve genomic phasing of trios.

  • Authors : Miller DB; Department of Biology, Brigham Young University, Provo, UT, 84602, USA.; Piccolo SR

Subjects: Genome* ; Polymorphism, Single Nucleotide*; Algorithms

  • Source: BMC bioinformatics [BMC Bioinformatics] 2021 Nov 22; Vol. 22 (1), pp. 559. Date of Electronic Publication: 2021 Nov 22.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium:

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Academic Journal

Comparison of sequencing data processing pipelines and application to underrepresented African human populations.

  • Authors : Breton G; Human Evolution, Department of Organismal Biology, Evolutionary Biology Centre, Uppsala University, Norbyvägen 18C, 752 36, Uppsala, Sweden. .; Johansson ACV

Subjects: Genome* ; Polymorphism, Single Nucleotide*; Computational Biology

  • Source: BMC bioinformatics [BMC Bioinformatics] 2021 Oct 09; Vol. 22 (1), pp. 488. Date of Electronic Publication: 2021 Oct 09.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium:

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Academic Journal

Whole genome resequencing data for rock pigeon (Columba livia).

  • Authors : Esmailizadeh A; Department of Animal Science, Faculty of Agriculture, Shahid Bahonar University of Kerman, PB 76169-133, Kerman, Iran.; State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, No. 32 Jiaochang Donglu, Kunming, 650223, Yunnan, China.

Subjects: Columbidae*/Columbidae*/Columbidae*/genetics ; Genome*; Animals

  • Source: BMC research notes [BMC Res Notes] 2021 Aug 09; Vol. 14 (1), pp. 305. Date of Electronic Publication: 2021 Aug 09.Publisher: Biomed Central Country of Publication: England NLM ID: 101462768 Publication Model: Electronic Cited Medium:

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Academic Journal

Population differentiated copy number variation of Bos taurus, Bos indicus and their African hybrids.

  • Authors : Jang J; Interdisciplinary Program in Bioinformatics, Seoul National University, Seoul, Republic of Korea.; Terefe E

Subjects: DNA Copy Number Variations* ; Genome*; Animals

  • Source: BMC genomics [BMC Genomics] 2021 Jul 12; Vol. 22 (1), pp. 531. Date of Electronic Publication: 2021 Jul 12.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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