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Academic Journal

Comprehensive evaluation of structural variant genotyping methods based on long-read sequencing data.

  • Authors : Duan X; State Key Laboratory of Genetic Engineering, Human Phenome Institute, Zhangjiang Fudan International Innovation Center, Fudan University, Shanghai, 200438, China.; MOE Key Laboratory of Contemporary Anthropology, Department of Anthropology and Human Genetics, School of Life Sciences, Fudan University, Shanghai, 200433, China.

Subjects: Genomics*/Genomics*/Genomics*/methods ; High-Throughput Nucleotide Sequencing*; Genomic Structural Variation

  • Source: BMC genomics [BMC Genomics] 2022 Apr 23; Vol. 23 (1), pp. 324. Date of Electronic Publication: 2022 Apr 23.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

RResolver: efficient short-read repeat resolution within ABySS.

  • Authors : Nikolić V; Canada's Michael Smith Genome Sciences Centre at BC Cancer, 570 W 7th Ave, Vancouver, V5Z 4S6, Canada.; The University of British Columbia, 2329 West Mall, Vancouver, V6T 1Z4, Canada.

Subjects: Genomics*/Genomics*/Genomics*/methods ; Software*; Algorithms

  • Source: BMC bioinformatics [BMC Bioinformatics] 2022 Jun 21; Vol. 23 (1), pp. 246. Date of Electronic Publication: 2022 Jun 21.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium:

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Academic Journal

Signature selection analysis reveals candidate genes associated with production traits in Iranian sheep breeds.

Subjects: Genomics* ; High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/veterinary; Sheep, Domestic/Sheep, Domestic/Sheep, Domestic/*genetics

  • Source: BMC veterinary research [BMC Vet Res] 2021 Dec 03; Vol. 17 (1), pp. 369. Date of Electronic Publication: 2021 Dec 03.Publisher: BioMed Central Country of Publication: England NLM ID: 101249759 Publication Model: Electronic Cited Medium:

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Academic Journal

HaplotypeTools: a toolkit for accurately identifying recombination and recombinant genotypes.

  • Authors : Farrer RA; Medical Research Council Centre for Medical Mycology at the University of Exeter, Exeter, UK. .

Subjects: Genomics* ; High-Throughput Nucleotide Sequencing*; Algorithms

  • Source: BMC bioinformatics [BMC Bioinformatics] 2021 Nov 22; Vol. 22 (1), pp. 560. Date of Electronic Publication: 2021 Nov 22.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium:

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Academic Journal

LongStitch: high-quality genome assembly correction and scaffolding using long reads.

  • Authors : Coombe L; Canada's Michael Smith Genome Sciences Centre, BC Cancer Research, 100-570 West 7th Avenue, Vancouver, BC, V5Z 4S6, Canada. .; Li JX

Subjects: Genomics* ; High-Throughput Nucleotide Sequencing*; Genome

  • Source: BMC bioinformatics [BMC Bioinformatics] 2021 Oct 30; Vol. 22 (1), pp. 534. Date of Electronic Publication: 2021 Oct 30.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium:

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Academic Journal

Development of a versatile resource for post-genomic research through consolidating and characterizing 1500 diverse wild and cultivated soybean genomes.

  • Authors : Zhang H; Donald Danforth Plant Science Center, St Louis, MO 63132, USA.; Jiang H

Subjects: Genomics* ; Soybeans*/Soybeans*/Soybeans*/genetics; Chromosome Mapping

  • Source: BMC genomics [BMC Genomics] 2022 Mar 31; Vol. 23 (1), pp. 250. Date of Electronic Publication: 2022 Mar 31.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

SAUTE: sequence assembly using target enrichment.

  • Authors : Souvorov A; NCBI/NLM/NIH/DHHS, 8600 Rockville Pike, Bethesda, MD, 20894, USA.; Agarwala R

Subjects: Genomics* ; High-Throughput Nucleotide Sequencing*; Algorithms

  • Source: BMC bioinformatics [BMC Bioinformatics] 2021 Jul 21; Vol. 22 (1), pp. 375. Date of Electronic Publication: 2021 Jul 21.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium:

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Academic Journal

kataegis: an R package for identification and visualization of the genomic localized hypermutation regions using high-throughput sequencing.

  • Authors : Lin X; Department of Bioinformatics, School of Biomedical Engineering and Informatics, Nanjing Medical University, 211166, Nanjing, People's Republic of China. .; Hua Y

Subjects: Genomics* ; High-Throughput Nucleotide Sequencing*; Mutation

  • Source: BMC genomics [BMC Genomics] 2021 Jun 12; Vol. 22 (1), pp. 440. Date of Electronic Publication: 2021 Jun 12.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Overcoming uncollapsed haplotypes in long-read assemblies of non-model organisms.

  • Authors : Guiglielmoni N; Service Evolution Biologique et Ecologie, Université libre de Bruxelles (ULB), Avenue Franklin D. Roosevelt 50, 1050, Brussels, Belgium. .; Houtain A

Subjects: Genomics* ; High-Throughput Nucleotide Sequencing*; Genome

  • Source: BMC bioinformatics [BMC Bioinformatics] 2021 Jun 05; Vol. 22 (1), pp. 303. Date of Electronic Publication: 2021 Jun 05.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium:

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Academic Journal

2-kupl: mapping-free variant detection from DNA-seq data of matched samples.

  • Authors : Wang Y; Institute of Integrative Cell Biology (I2BC), Université Paris-Saclay, CNRS, CEA, 1 avenue de la Terrasse, 91190, Gif-sur-Yvette, France.; Annoroad Gene Technology Co., Ltd, Beijing, 100176, China.

Subjects: Genomics* ; High-Throughput Nucleotide Sequencing*; DNA

  • Source: BMC bioinformatics [BMC Bioinformatics] 2021 Jun 05; Vol. 22 (1), pp. 304. Date of Electronic Publication: 2021 Jun 05.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium:

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