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Academic Journal

Noninvasive prenatal paternity determination using microhaplotypes: a pilot study.

  • Authors : Wang JYT; Department of Clinical Toxicological Analyzes, School of Pharmaceutical Sciences, University of São Paulo, São Paulo, Brazil.; Whittle MR

Subjects: Genetic Markers* ; Haplotypes* ; Paternity*

  • Source: BMC medical genomics [BMC Med Genomics] 2020 Oct 23; Vol. 13 (1), pp. 157. Date of Electronic Publication: 2020 Oct 23.Publisher: BioMed Central Country of Publication: England NLM ID: 101319628 Publication Model: Electronic Cited Medium:

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Academic Journal

Haplotyping by linked-read sequencing (HLRS) of the genetic disease carriers for preimplantation genetic testing without a proband or relatives.

  • Authors : Li Q; The Third Affiliated Hospital of Guangzhou Medical University, 63 Duobao Road, Guangzhou, 510150, Guangdong Province, China.; Mao Y

Subjects: Genetic Linkage* ; Haplotypes* ; Polymorphism, Single Nucleotide*

  • Source: BMC medical genomics [BMC Med Genomics] 2020 Aug 20; Vol. 13 (1), pp. 117. Date of Electronic Publication: 2020 Aug 20.Publisher: BioMed Central Country of Publication: England NLM ID: 101319628 Publication Model: Electronic Cited Medium:

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Academic Journal

scHaplotyper: haplotype construction and visualization for genetic diagnosis using single cell DNA sequencing data.

  • Authors : Yan Z; Center for Reproductive Medicine, Department of Obstetrics and Gynecology, Peking University Third Hospital, Beijing, 100191, China.; Key Laboratory of Assisted Reproduction, Ministry of Education, Beijing, 100191, China.

Subjects: Haplotypes*; Genetic Testing/Genetic Testing/Genetic Testing/*methods ; Preimplantation Diagnosis/Preimplantation Diagnosis/Preimplantation Diagnosis/*methods

  • Source: BMC bioinformatics [BMC Bioinformatics] 2020 Feb 01; Vol. 21 (1), pp. 41. Date of Electronic Publication: 2020 Feb 01.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium:

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Academic Journal

Evaluating the quality of the 1000 genomes project data.

  • Authors : Belsare S; Institute for Human Genetics, University of California, San Francisco, CA, 94143, USA. .; Levy-Sakin M

Subjects: Genome, Human/Genome, Human/Genome, Human/*genetics ; Haplotypes/Haplotypes/Haplotypes/*genetics ; Racial Groups/Racial Groups/Racial Groups/*genetics

  • Source: BMC genomics [BMC Genomics] 2019 Aug 16; Vol. 20 (1), pp. 620. Date of Electronic Publication: 2019 Aug 16.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

GPU accelerated sequence alignment with traceback for GATK HaplotypeCaller.

  • Authors : Ren S; Delft University of Technology, Mekelweg 4, Delft, 2628 CD, The Netherlands.; Ahmed N

Subjects: Algorithms* ; Computer Graphics* ; Genetic Variation*

  • Source: BMC genomics [BMC Genomics] 2019 Apr 04; Vol. 20 (Suppl 2), pp. 184. Date of Electronic Publication: 2019 Apr 04.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

ADS-HCSpark: A scalable HaplotypeCaller leveraging adaptive data segmentation to accelerate variant calling on Spark.

  • Authors : Xiao A; Communication & Computer Network Lab of Guangdong, School of Computer Science & Engineering, South China University of Technology, Wushan Road, Guangzhou, 510641, China.; Wu Z

Subjects: Algorithms* ; Genetic Variation* ; Software*

  • Source: BMC bioinformatics [BMC Bioinformatics] 2019 Feb 14; Vol. 20 (1), pp. 76. Date of Electronic Publication: 2019 Feb 14.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium:

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Academic Journal

Purge Haplotigs: allelic contig reassignment for third-gen diploid genome assemblies.

  • Authors : Roach MJ; The Australian Wine Research Institute, PO Box 197, Glen Osmond, SA, 5064, Australia. .; Schmidt SA

Subjects: Alleles* ; Contig Mapping* ; Diploidy*

  • Source: BMC bioinformatics [BMC Bioinformatics] 2018 Nov 29; Vol. 19 (1), pp. 460. Date of Electronic Publication: 2018 Nov 29.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium:

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Academic Journal

HAPDeNovo: a haplotype-based approach for filtering and phasing de novo mutations in linked read sequencing data.

  • Authors : Zhou X; Department of Computer Science, Stanford University, Stanford, California, 94305, USA.; Batzoglou S

Subjects: Genome, Human* ; Haplotypes* ; Mutation*

  • Source: BMC genomics [BMC Genomics] 2018 Jun 18; Vol. 19 (1), pp. 467. Date of Electronic Publication: 2018 Jun 18.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

PWHATSHAP: efficient haplotyping for future generation sequencing.

  • Authors : Bracciali A; Computer Science and Mathematics, School of Natural Sciences, Stirling University, Stirling, FK9 4LA, UK. .; Aldinucci M

Subjects: Algorithms* ; Genome, Human*; Computational Biology/Computational Biology/Computational Biology/*methods

  • Source: BMC bioinformatics [BMC Bioinformatics] 2016 Sep 22; Vol. 17 (Suppl 11), pp. 342. Date of Electronic Publication: 2016 Sep 22.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium:

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Academic Journal

Complete haplotype phasing of the MHC and KIR loci with targeted HaploSeq.

Subjects: Haplotypes/Haplotypes/Haplotypes/*genetics ; High-Throughput Nucleotide Sequencing/High-Throughput Nucleotide Sequencing/High-Throughput Nucleotide Sequencing/*methods ; Major Histocompatibility Complex/Major Histocompatibility Complex/Major Histocompatibility Complex/*genetics

  • Source: BMC genomics [BMC Genomics] 2015 Nov 05; Vol. 16, pp. 900. Date of Electronic Publication: 2015 Nov 05.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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