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Academic Journal

An open protocol for modeling T Cell Clonotype repertoires using TCRβ CDR3 sequences.

  • Authors : Gurun B; Knight Cancer Institute, Oregon Health & Science University, Portland, OR, USA. .; School of Medicine, Oregon Health and Science University, Portland, OR, USA. .

Subjects: High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/methods ; T-Lymphocytes*; Base Sequence

  • Source: BMC genomics [BMC Genomics] 2023 Jun 26; Vol. 24 (1), pp. 349. Date of Electronic Publication: 2023 Jun 26.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

T-RHEX-RNAseq - a tagmentation-based, rRNA blocked, random hexamer primed RNAseq method for generating stranded RNAseq libraries directly from very low numbers of lysed cells.

  • Authors : Gustafsson C; Department of Laboratory Medicine, Division of Clinical Immunology, Karolinska Institutet, ANA Futura, Alfred Nobels Allé 8 floor 7, Huddinge, SE-141 52, Sweden.; Hauenstein J

Subjects: High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/methods ; RNA, Ribosomal*/RNA, Ribosomal*/RNA, Ribosomal*/genetics; Base Sequence

  • Source: BMC genomics [BMC Genomics] 2023 Apr 17; Vol. 24 (1), pp. 205. Date of Electronic Publication: 2023 Apr 17.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Highly accurate long reads are crucial for realizing the potential of biodiversity genomics.

  • Authors : Hotaling S; Department of Watershed Sciences, Utah State University, Logan, UT, USA. .; Wilcox ER

Subjects: Genomics*/Genomics*/Genomics*/methods ; Genomics*/Genomics*/Genomics*/standards ; Genomics*/Genomics*/Genomics*/trends

  • Source: BMC genomics [BMC Genomics] 2023 Mar 16; Vol. 24 (1), pp. 117. Date of Electronic Publication: 2023 Mar 16.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Benchmarking datasets for assembly-based variant calling using high-fidelity long reads.

  • Authors : Lee H; Institute of Molecular Biology and Genetics, Seoul National University, Seoul, 08826, Korea.; Department of Biological Sciences, Seoul National University, Seoul, 08826, Korea.

Subjects: Benchmarking* ; High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/methods; Humans

  • Source: BMC genomics [BMC Genomics] 2023 Mar 27; Vol. 24 (1), pp. 148. Date of Electronic Publication: 2023 Mar 27.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Comparison of the Illumina NextSeq 2000 and GeneMind Genolab M sequencing platforms for spatial transcriptomics.

  • Authors : Pavel I; Laboratory of Cancer Progression Biology, Cancer Research Institute, Tomsk National Research Medical Center, Russian Academy of Sciences, Tomsk, 634009, Russia.; Laboratory of Translational Cellular and Molecular Biomedicine, Tomsk State University, Tomsk, 634050, Russia.

Subjects: Transcriptome* ; High-Throughput Nucleotide Sequencing*; Gene Expression Profiling

  • Source: BMC genomics [BMC Genomics] 2023 Mar 07; Vol. 24 (1), pp. 102. Date of Electronic Publication: 2023 Mar 07.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

peaksat: an R package for ChIP-seq peak saturation analysis.

  • Authors : Boyd JR; Department of Biomedical and Health Sciences, University of Vermont, 106 Carrigan Drive, 302 Rowell, VT, 04505, Burlington, USA.; Gao C

Subjects: Chromatin Immunoprecipitation Sequencing*/Chromatin Immunoprecipitation Sequencing*/Chromatin Immunoprecipitation Sequencing*/methods ; High-Throughput Nucleotide Sequencing*; Sequence Analysis, DNA/Sequence Analysis, DNA/Sequence Analysis, DNA/methods

  • Source: BMC genomics [BMC Genomics] 2023 Jan 25; Vol. 24 (1), pp. 43. Date of Electronic Publication: 2023 Jan 25.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

XCVATR: detection and characterization of variant impact on the Embeddings of single -cell and bulk RNA-sequencing samples.

  • Authors : Harmanci A; University of Texas Health Science Center, School of Biomedical Informatics, Center for Secure Artificial intelligence For hEalthcare (SAFE), Center for Precision Health, Houston, USA. .; Harmanci AS

Subjects: Gene Expression Profiling*/Gene Expression Profiling*/Gene Expression Profiling*/methods ; High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/methods; Transcriptome

  • Source: BMC genomics [BMC Genomics] 2022 Dec 20; Vol. 23 (1), pp. 841. Date of Electronic Publication: 2022 Dec 20.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Identification and analysis of RNA-5-methylcytosine-related key genes in osteoarthritis.

  • Authors : Yu Y; Department of Orthopedics, the First Affiliated Hospital of Zhengzhou University, Zhengzhou, China.; Lu S

Subjects: RNA* ; Osteoarthritis*/Osteoarthritis*/Osteoarthritis*/genetics; Humans

  • Source: BMC genomics [BMC Genomics] 2023 Sep 12; Vol. 24 (1), pp. 539. Date of Electronic Publication: 2023 Sep 12.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Comparison of 6 DNA extraction methods for isolation of high yield of high molecular weight DNA suitable for shotgun metagenomics Nanopore sequencing to detect bacteria.

  • Authors : Gand M; Transversal Activities in Applied Genomics, Sciensano, Rue Juliette Wytsman 14, 1050, Brussels, Belgium.; Bloemen B

Subjects: Nanopore Sequencing* ; Nanopores*; Metagenomics/Metagenomics/Metagenomics/methods

  • Source: BMC genomics [BMC Genomics] 2023 Aug 04; Vol. 24 (1), pp. 438. Date of Electronic Publication: 2023 Aug 04.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Bioinformatics for wet-lab scientists: practical application in sequencing analysis.

  • Authors : Laub V; Neurological Institute (Edinger Institute), University Hospital Frankfurt, Goethe University, Frankfurt, Germany. .; Devraj K

Subjects: Computational Biology*/Computational Biology*/Computational Biology*/methods ; Genomics*/Genomics*/Genomics*/methods; High-Throughput Nucleotide Sequencing/High-Throughput Nucleotide Sequencing/High-Throughput Nucleotide Sequencing/methods

  • Source: BMC genomics [BMC Genomics] 2023 Jul 07; Vol. 24 (1), pp. 382. Date of Electronic Publication: 2023 Jul 07.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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  • 1-10 of  3,034 results for ""NUCLEOTIDE sequencing""