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Academic Journal

Breed-specific reference sequence optimized mapping accuracy of NGS analyses for pigs.

  • Authors : Wang D; National Engineering Laboratory for Animal Breeding, Ministry of Agricultural Key Laboratory of Animal Genetics, Breeding and Reproduction, College of Animal Science and Technology, China Agricultural University, Beijing, China.; College of Animal Science and Technology, Shandong Agricultural University, Tai'an, China.

Subjects: High-Throughput Nucleotide Sequencing* ; Polymorphism, Single Nucleotide*; Animals

  • Source: BMC genomics [BMC Genomics] 2021 Oct 12; Vol. 22 (1), pp. 736. Date of Electronic Publication: 2021 Oct 12.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

CAMPAREE: a robust and configurable RNA expression simulator.

  • Authors : Lahens NF; The Institute for Translational Medicine and Therapeutics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA.; Brooks TG

Subjects: High-Throughput Nucleotide Sequencing* ; Software*; Algorithms

  • Source: BMC genomics [BMC Genomics] 2021 Sep 25; Vol. 22 (1), pp. 692. Date of Electronic Publication: 2021 Sep 25.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

High contiguity de novo genome assembly and DNA modification analyses for the fungus fly, Sciara coprophila, using single-molecule sequencing.

  • Authors : Urban JM; Department of Molecular Biology, Cell Biology and Biochemistry, Brown University Division of Biology and Medicine, Sidney Frank Hall for Life Sciences, 185 Meeting Street, Providence, RI, 02912, USA. .; Department of Embryology, Carnegie Institution for Science, Howard Hughes Medical Institute Research Laboratories, 3520 San Martin Drive, Baltimore, MD, 21218, USA. .

Subjects: High-Throughput Nucleotide Sequencing* ; X Chromosome*; DNA

  • Source: BMC genomics [BMC Genomics] 2021 Sep 06; Vol. 22 (1), pp. 643. Date of Electronic Publication: 2021 Sep 06.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

kataegis: an R package for identification and visualization of the genomic localized hypermutation regions using high-throughput sequencing.

  • Authors : Lin X; Department of Bioinformatics, School of Biomedical Engineering and Informatics, Nanjing Medical University, 211166, Nanjing, People's Republic of China. .; Hua Y

Subjects: Genomics* ; High-Throughput Nucleotide Sequencing*; Mutation

  • Source: BMC genomics [BMC Genomics] 2021 Jun 12; Vol. 22 (1), pp. 440. Date of Electronic Publication: 2021 Jun 12.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Cruxome: a powerful tool for annotating, interpreting and reporting genetic variants.

  • Authors : Han Q; Berry Genomics Company Limited, Building 5, Courtyard 4, Shengmingyuan Road, ZGC Life Science Park, Changping District, 102200, Beijing, China.; Yang Y

Subjects: Genomics* ; High-Throughput Nucleotide Sequencing*; Algorithms

  • Source: BMC genomics [BMC Genomics] 2021 Jun 03; Vol. 22 (1), pp. 407. Date of Electronic Publication: 2021 Jun 03.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Evaluation of tools for identifying large copy number variations from ultra-low-coverage whole-genome sequencing data.

  • Authors : Smolander J; Turku Bioscience Centre, University of Turku and Åbo Akademi University, 20520, Turku, Finland.; Khan S

Subjects: DNA Copy Number Variations* ; High-Throughput Nucleotide Sequencing*; Algorithms

  • Source: BMC genomics [BMC Genomics] 2021 May 17; Vol. 22 (1), pp. 357. Date of Electronic Publication: 2021 May 17.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Hybrid genome de novo assembly with methylome analysis of the anaerobic thermophilic subsurface bacterium Thermanaerosceptrum fracticalcis strain DRI-13 T .

  • Authors : Murphy TR; Department of Microbiology, Southern Illinois University Carbondale, Carbondale, IL, USA.; Xiao R

Subjects: Epigenome* ; High-Throughput Nucleotide Sequencing*; Anaerobiosis

  • Source: BMC genomics [BMC Genomics] 2021 Mar 23; Vol. 22 (1), pp. 209. Date of Electronic Publication: 2021 Mar 23.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Impact of short-read sequencing on the misassembly of a plant genome.

  • Authors : Wang P; Department of Plant Biology, Michigan State University, East Lansing, MI, 48824, USA.; DOE Great Lake Bioenergy Research Center, Michigan State University, East Lansing, MI, 48824, USA.

Subjects: Genome, Plant* ; High-Throughput Nucleotide Sequencing*; DNA Transposable Elements/DNA Transposable Elements/DNA Transposable Elements/genetics

  • Source: BMC genomics [BMC Genomics] 2021 Feb 02; Vol. 22 (1), pp. 99. Date of Electronic Publication: 2021 Feb 02.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Reliability of genomic variants across different next-generation sequencing platforms and bioinformatic processing pipelines.

  • Authors : Weißbach S; Institute of Human Genetics, University Medical Center of the Johannes Gutenberg-University Mainz, Mainz, Germany.; Institute of Developmental Biology and Neurobiology, Johannes Gutenberg-University Mainz, Mainz, Germany.

Subjects: Computational Biology* ; High-Throughput Nucleotide Sequencing*; Cross-Sectional Studies

  • Source: BMC genomics [BMC Genomics] 2021 Jan 19; Vol. 22 (1), pp. 62. Date of Electronic Publication: 2021 Jan 19.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

intePareto: an R package for integrative analyses of RNA-Seq and ChIP-Seq data.

  • Authors : Cao Y; Bioinformatics and Computational Biophysics, Faculty of Biology and Center for Medical Biotechnology (ZMB), University of Duisburg-Essen, Universitätsstr.2, Essen, 45141, Germany. .; Kitanovski S

Subjects: Chromatin Immunoprecipitation Sequencing* ; High-Throughput Nucleotide Sequencing*; Chromatin Immunoprecipitation

  • Source: BMC genomics [BMC Genomics] 2020 Dec 29; Vol. 21 (Suppl 11), pp. 802. Date of Electronic Publication: 2020 Dec 29.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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