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Academic Journal

Accuracy benchmark of the GeneMind GenoLab M sequencing platform for WGS and WES analysis.

  • Authors : Li C; GeneMind Biosciences Company Limited, Shenzhen, China.; Fan X

Subjects: Benchmarking* ; High-Throughput Nucleotide Sequencing*; INDEL Mutation

  • Source: BMC genomics [BMC Genomics] 2022 Jul 22; Vol. 23 (1), pp. 533. Date of Electronic Publication: 2022 Jul 22.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Evaluation of nine statistics to identify QTLs in bulk segregant analysis using next generation sequencing approaches.

Subjects: High-Throughput Nucleotide Sequencing* ; Quantitative Trait Loci*; Benchmarking

  • Source: BMC genomics [BMC Genomics] 2022 Jul 06; Vol. 23 (1), pp. 490. Date of Electronic Publication: 2022 Jul 06.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Manipulating base quality scores enables variant calling from bisulfite sequencing alignments using conventional bayesian approaches.

  • Authors : Nunn A; ecSeq Bioinformatics GmbH, Sternwartenstraße 29, Leipzig, 04103, Germany.; Department of Computer Science, University of Leipzig, Härtelstraße 16-18, Leipzig, 04107, Germany.

Subjects: High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/methods; Bayes Theorem ; Humans

  • Source: BMC genomics [BMC Genomics] 2022 Jun 28; Vol. 23 (1), pp. 477. Date of Electronic Publication: 2022 Jun 28.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

B-assembler: a circular bacterial genome assembler.

  • Authors : Huang F; Informatics Institute, Heersink School of Medicine, the University of Alabama at Birmingham, AL, 35294, Birmingham, USA.; Department of Genetics, Heersink School of Medicine, the University of Alabama at Birmingham, AL, 35294, Birmingham, USA.

Subjects: Genome, Bacterial* ; High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/methods; Bacteria/Bacteria/Bacteria/genetics

  • Source: BMC genomics [BMC Genomics] 2022 May 11; Vol. 23 (Suppl 4), pp. 361. Date of Electronic Publication: 2022 May 11.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Comprehensive evaluation of structural variant genotyping methods based on long-read sequencing data.

  • Authors : Duan X; State Key Laboratory of Genetic Engineering, Human Phenome Institute, Zhangjiang Fudan International Innovation Center, Fudan University, Shanghai, 200438, China.; MOE Key Laboratory of Contemporary Anthropology, Department of Anthropology and Human Genetics, School of Life Sciences, Fudan University, Shanghai, 200433, China.

Subjects: Genomics*/Genomics*/Genomics*/methods ; High-Throughput Nucleotide Sequencing*; Genomic Structural Variation

  • Source: BMC genomics [BMC Genomics] 2022 Apr 23; Vol. 23 (1), pp. 324. Date of Electronic Publication: 2022 Apr 23.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Protocol variations in run-on transcription dataset preparation produce detectable signatures in sequencing libraries.

  • Authors : Hunter S; BioFrontiers Institute, University of Colorado, Boulder, 80309, USA.; Sigauke RF

Subjects: Genomic Library* ; High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/methods; Databases, Genetic

  • Source: BMC genomics [BMC Genomics] 2022 Mar 07; Vol. 23 (1), pp. 187. Date of Electronic Publication: 2022 Mar 07.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

HiFiAdapterFilt, a memory efficient read processing pipeline, prevents occurrence of adapter sequence in PacBio HiFi reads and their negative impacts on genome assembly.

  • Authors : Sim SB; USDA-ARS Daniel K. Inouye US Pacific Basin Agricultural Research Center, 64 Nowelo Street, Hilo, HI, 96720, USA. .; Corpuz RL

Subjects: High-Throughput Nucleotide Sequencing* ; Software*; Gene Library

  • Source: BMC genomics [BMC Genomics] 2022 Feb 22; Vol. 23 (1), pp. 157. Date of Electronic Publication: 2022 Feb 22.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Optimization of enzymatic fragmentation is crucial to maximize genome coverage: a comparison of library preparation methods for Illumina sequencing.

  • Authors : Ribarska T; Department Medical Genetics, Oslo University Hospital and University of Oslo, Kirkeveien 166, 0450, Oslo, Norway.; Bjørnstad PM

Subjects: Genome* ; High-Throughput Nucleotide Sequencing*; Gene Library

  • Source: BMC genomics [BMC Genomics] 2022 Feb 01; Vol. 23 (1), pp. 92. Date of Electronic Publication: 2022 Feb 01.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Long range PCR-based deep sequencing for haplotype determination in mixed HCMV infections.

  • Authors : Brait N; Center for Virology, Medical University of Vienna, Vienna, Austria.; Groningen Institute for Evolutionary Life Sciences, University of Groningen, Groningen, Netherlands.

Subjects: Cytomegalovirus*/Cytomegalovirus*/Cytomegalovirus*/genetics ; High-Throughput Nucleotide Sequencing*; Haplotypes

  • Source: BMC genomics [BMC Genomics] 2022 Jan 06; Vol. 23 (1), pp. 31. Date of Electronic Publication: 2022 Jan 06.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

Baiting out a full length sequence from unmapped RNA-seq data.

  • Authors : Li D; Animal Functional Genomics Group, Shenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, 518120, China.; Guangdong Provincial Key Laboratory of Protein Function and Regulation in Agricultural Organisms, College of Life Sciences, South China Agricultural University, Guangzhou, Guangdong, 510642, China.

Subjects: High-Throughput Nucleotide Sequencing*; DNA, Complementary ; RNA-Seq

  • Source: BMC genomics [BMC Genomics] 2021 Nov 27; Vol. 22 (1), pp. 857. Date of Electronic Publication: 2021 Nov 27.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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