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Academic Journal

High contiguity de novo genome assembly and DNA modification analyses for the fungus fly, Sciara coprophila, using single-molecule sequencing.

  • Authors : Urban JM; Department of Molecular Biology, Cell Biology and Biochemistry, Brown University Division of Biology and Medicine, Sidney Frank Hall for Life Sciences, 185 Meeting Street, Providence, RI, 02912, USA. .; Department of Embryology, Carnegie Institution for Science, Howard Hughes Medical Institute Research Laboratories, 3520 San Martin Drive, Baltimore, MD, 21218, USA. .

Subjects: High-Throughput Nucleotide Sequencing* ; X Chromosome*; DNA

  • Source: BMC genomics [BMC Genomics] 2021 Sep 06; Vol. 22 (1), pp. 643. Date of Electronic Publication: 2021 Sep 06.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Academic Journal

HELLO: improved neural network architectures and methodologies for small variant calling.

  • Authors : Ramachandran A; Department of Electrical and Computer Engineering, University of Illinois At Urbana-Champaign, Urbana, IL, 61801, USA.; Lumetta SS

Subjects: High-Throughput Nucleotide Sequencing* ; Neural Networks, Computer*; Humans

  • Source: BMC bioinformatics [BMC Bioinformatics] 2021 Aug 14; Vol. 22 (1), pp. 404. Date of Electronic Publication: 2021 Aug 14.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium:

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Academic Journal

OVarFlow: a resource optimized GATK 4 based Open source Variant calling workFlow.

  • Authors : Bathke J; Institute of Animal Breeding and Genetics, Justus Liebig University Gießen, Ludwigstraße 21, 35390, Gießen, Germany. .; Lühken G

Subjects: High-Throughput Nucleotide Sequencing* ; Software*; Genome

  • Source: BMC bioinformatics [BMC Bioinformatics] 2021 Aug 13; Vol. 22 (1), pp. 402. Date of Electronic Publication: 2021 Aug 13.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium:

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Academic Journal

SAUTE: sequence assembly using target enrichment.

  • Authors : Souvorov A; NCBI/NLM/NIH/DHHS, 8600 Rockville Pike, Bethesda, MD, 20894, USA.; Agarwala R

Subjects: Genomics* ; High-Throughput Nucleotide Sequencing*; Algorithms

  • Source: BMC bioinformatics [BMC Bioinformatics] 2021 Jul 21; Vol. 22 (1), pp. 375. Date of Electronic Publication: 2021 Jul 21.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium:

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Academic Journal

Pheniqs 2.0: accurate, high-performance Bayesian decoding and confidence estimation for combinatorial barcode indexing.

  • Authors : Galanti L; Department of Biology, Center for Genomics and System Biology, New York University, New York, USA.; NYU Abu Dhabi Center for Genomics and System Biology, New York University, Abu Dhabi, United Arab Emirates.

Subjects: Electronic Data Processing* ; High-Throughput Nucleotide Sequencing*; Bayes Theorem

  • Source: BMC bioinformatics [BMC Bioinformatics] 2021 Jul 02; Vol. 22 (1), pp. 359. Date of Electronic Publication: 2021 Jul 02.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium:

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Academic Journal

A case of chlamydia psittaci caused severe pneumonia and meningitis diagnosed by metagenome next-generation sequencing and clinical analysis: a case report and literature review.

  • Authors : Shi Y; Medical Intensive Care Unit, Department of Respiratory and Critical Care Medicine, Third Affiliated Hospital of Sun Yat-Sen University, Guangzhou, 510630, China.; Institute of Respiratory Diseases, Sun Yat-Sen University, Guangzhou, China.

Subjects: High-Throughput Nucleotide Sequencing* ; Metagenome*; Chlamydial Pneumonia/Chlamydial Pneumonia/Chlamydial Pneumonia/*diagnosis

  • Source: BMC infectious diseases [BMC Infect Dis] 2021 Jun 30; Vol. 21 (1), pp. 621. Date of Electronic Publication: 2021 Jun 30.Publisher: BioMed Central Country of Publication: England NLM ID: 100968551 Publication Model: Electronic Cited Medium:

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Academic Journal

A novel nonlinear dimension reduction approach to infer population structure for low-coverage sequencing data.

  • Authors : Zhang M; Interdisciplinary Program in Statistics and Data Science, University of Arizona, 617 N. Santa Rita Ave., 85721, Tucson, USA.; Liu Y

Subjects: High-Throughput Nucleotide Sequencing* ; Polymorphism, Single Nucleotide*; Alleles

  • Source: BMC bioinformatics [BMC Bioinformatics] 2021 Jun 26; Vol. 22 (1), pp. 348. Date of Electronic Publication: 2021 Jun 26.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium:

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Academic Journal

Next-generation sequencing combined with serological tests based pathogen analysis for a neurocysticercosis patient with a 20-year history:a case report.

  • Authors : Chen B; Department of Neurology, Beijing Friendship Hospital, Capital Medical University, Beijing, China.; Chen Z

Subjects: High-Throughput Nucleotide Sequencing* ; Neurocysticercosis*/Neurocysticercosis*/Neurocysticercosis*/diagnosis ; Neurocysticercosis*/Neurocysticercosis*/Neurocysticercosis*/immunology

  • Source: BMC neurology [BMC Neurol] 2021 Jun 24; Vol. 21 (1), pp. 236. Date of Electronic Publication: 2021 Jun 24.Publisher: BioMed Central Country of Publication: England NLM ID: 100968555 Publication Model: Electronic Cited Medium:

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Academic Journal

TPM, FPKM, or Normalized Counts? A Comparative Study of Quantification Measures for the Analysis of RNA-seq Data from the NCI Patient-Derived Models Repository.

  • Authors : Zhao Y; Biometric Research Program, Division of Cancer Treatment and Diagnosis, National Cancer Institute, Rockville, MD, USA.; Li MC

Subjects: High-Throughput Nucleotide Sequencing* ; RNA*; Gene Expression Profiling

  • Source: Journal of translational medicine [J Transl Med] 2021 Jun 22; Vol. 19 (1), pp. 269. Date of Electronic Publication: 2021 Jun 22.Publisher: BioMed Central Country of Publication: England NLM ID: 101190741 Publication Model: Electronic Cited Medium:

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Academic Journal

SVNN: an efficient PacBio-specific pipeline for structural variations calling using neural networks.

Subjects: Diagnostic Tests, Routine* ; High-Throughput Nucleotide Sequencing*; Neural Networks, Computer

  • Source: BMC bioinformatics [BMC Bioinformatics] 2021 Jun 19; Vol. 22 (1), pp. 335. Date of Electronic Publication: 2021 Jun 19.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium:

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  • 1-10 of  8,589 results for ""NUCLEOTIDE sequencing""